Browse Element(s) Details


OsAffx.25921.1.S1_at

Description tigr:9632.m00721
TID=OsAffx.25921.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0808011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08060OsAffx.3743.1.S1_s_at11/114+4283477..4284505Zinc finger, C2H2 type family protein, expressed
LOC_Os04g08070Os.54504.1.S1_at10/114+4296256..4297594expressed protein
LOC_Os04g08070Os.54504.1.S1_x_at10/114+4296256..4297594expressed protein
LOC_Os04g08080OsAffx.25921.1.S1_at11/114+4306203..4308461hypothetical protein
LOC_Os04g08094NANA4+4311319..4311850NA
LOC_Os04g08110Os.54504.1.S1_x_at1/114+4313792..4314583hypothetical protein
LOC_Os04g08110OsAffx.25922.2.S1_at1/114+4313792..4314583hypothetical protein
LOC_Os04g08120OsAffx.25936.1.S1_s_at11/114+4317877..4319054hypothetical protein
LOC_Os04g08120OsAffx.25936.7.S1_s_at11/114+4317877..4319054hypothetical protein
LOC_Os04g08120OsAffx.25936.2.S1_x_at8/114+4317877..4319054hypothetical protein
LOC_Os04g08120OsAffx.25936.5.S1_x_at2/114+4317877..4319054hypothetical protein
LOC_Os04g08130NANA4+4320076..4321399transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08150Os.10827.1.S1_x_at8/114+4325527..4329146transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08150Os.46055.2.S1_x_at6/114+4325527..4329146transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08150OsAffx.18122.1.S1_x_at1/114+4325527..4329146transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08160OsAffx.25922.2.S1_at11/114+4330906..4332201hypothetical protein
LOC_Os04g08170OsAffx.30829.2.S1_x_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08170OsAffx.28048.2.S1_x_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08170OsAffx.28048.2.S1_at1/114+4332837..4333358NAF domain containing protein
LOC_Os04g08170OsAffx.30829.2.S1_at1/114+4332837..4333358NAF domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25921.1.S1_at--214--3551Chr04:4306694..4306718 (25 bp)
CATCAAACGTCGACATCGGTTGGTG
LOC_Os04g08080
OsAffx.25921.1.S1_at--308--7731Chr04:4306664..4306688 (25 bp)
GGTGGCGACGACCTAGAGTCATCTT
LOC_Os04g08080
OsAffx.25921.1.S1_at--220--3231Chr04:4306630..4306654 (25 bp)
CAAGAAATATCTGCCGGCTACGCGA
LOC_Os04g08080
OsAffx.25921.1.S1_at--328--9951Chr04:4306612..4306636 (25 bp)
TACGCGATCTGTGGCGAGTTTCTCC
LOC_Os04g08080
OsAffx.25921.1.S1_at--691--6071Chr04:4306597..4306621 (25 bp)
GAGTTTCTCCAAAGACGATCGAGCA
LOC_Os04g08080
OsAffx.25921.1.S1_at--76--2091Chr04:4306528..4306552 (25 bp)
ACAGAAAACAAGAGTCCGGCGCCGT
LOC_Os04g08080
OsAffx.25921.1.S1_at--221--9251Chr04:4306514..4306538 (25 bp)
TCCGGCGCCGTTGAACTAAACAAAT
LOC_Os04g08080
OsAffx.25921.1.S1_at--940--2011Chr04:4306500..4306524 (25 bp)
ACTAAACAAATATCTCTCGCGCGGG
LOC_Os04g08080
OsAffx.25921.1.S1_at--405--9331Chr04:4306468..4306492 (25 bp)
TCGCCAAGAAATTGCTCCACCTAGA
LOC_Os04g08080
OsAffx.25921.1.S1_at--259--10711Chr04:4306457..4306481 (25 bp)
TTGCTCCACCTAGAGGTGTCACGTA
LOC_Os04g08080
OsAffx.25921.1.S1_at--193--8531Chr04:4306390..4306414 (25 bp)
TGGAAATGCTCTTCTACGCGGGCTA
LOC_Os04g08080
Target Sequence
CATCAAACGTCGACATCGGTTGGTGCCGCCGGTGGCGACGACCTAGAGTCATCTTCTTCCTCGCCAAGAAATATCTGCCG
GCTACGCGATCTGTGGCGAGTTTCTCCAAAGACGATCGAGCAACAGAACAAACTTGCTGGGATGCTTATCAAACAATGGG
AATGGGACAGAAAACAAGAGTCCGGCGCCGTTGAACTAAACAAATATCTCTCGCGCGGGATCGAGCTCGCCAAGAAATTG
CTCCACCTAGAGGTGTCACGTAAAGACATCGACAAGGTTCTGCAGGTGATCCTGGAGGTGTGGGTGGAAATGCTCTTCTA
CGCGGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis