Browse Element(s) Details


OsAffx.3743.1.S1_s_at

Description tigr:9632.m00719
TID=OsAffx.3743.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0806011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08034Os.20108.3.S1_at10/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08034Os.6984.1.S1_at10/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08034Os.20108.1.S1_a_at9/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08034OsAffx.18365.1.S1_at1/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08060OsAffx.3743.1.S1_s_at11/114+4283477..4284505Zinc finger, C2H2 type family protein, expressed
LOC_Os04g08070Os.54504.1.S1_at10/114+4296256..4297594expressed protein
LOC_Os04g08070Os.54504.1.S1_x_at10/114+4296256..4297594expressed protein
LOC_Os04g08080OsAffx.25921.1.S1_at11/114+4306203..4308461hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3743.1.S1_s_at--948--4331Chr04:4283970..4283994 (25 bp)
CCATGGAACCGGCAGCCGATGACAA
LOC_Os04g08060
OsAffx.3743.1.S1_s_at--948--5431Chr04:4283975..4283999 (25 bp)
GAACCGGCAGCCGATGACAAGATCA
LOC_Os04g08060
OsAffx.3743.1.S1_s_at--492--2811Chr04:4283993..4284017 (25 bp)
AAGATCAAGCCGACCATCCCGGAGA
LOC_Os04g08060
OsAffx.3743.1.S1_s_at--537--371Chr04:4283996..4284020 (25 bp)
ATCAAGCCGACCATCCCGGAGACAG
LOC_Os04g08060
OsAffx.3743.1.S1_s_at--1055--6351Chr04:4284095..4284119 (25 bp)
GATCCAACAGTGCTCGCGATCCCGG
LOC_Os04g08060
OsAffx.3743.1.S1_s_at--612--9331Chr04:4284108..4284132 (25 bp)
TCGCGATCCCGGTGATCCCGAAGCA
LOC_Os04g08060
OsAffx.3743.1.S1_s_at--544--7391Chr04:4284119..4284143 (25 bp)
GTGATCCCGAAGCAAGAAGTGCTCG
LOC_Os04g08060
OsAffx.3743.1.S1_s_at--83--5391Chr04:4284127..4284151 (25 bp)
GAAGCAAGAAGTGCTCGACGCCACC
LOC_Os04g08060
OsAffx.3743.1.S1_s_at--222--9211Chr04:4284176..4284200 (25 bp)
TCCAAGCAGCCACGTGTCCACGAGT
LOC_Os04g08060
OsAffx.3743.1.S1_s_at--790--1691Chr04:4284183..4284207 (25 bp)
AGCCACGTGTCCACGAGTGCTCCAT
LOC_Os04g08060
OsAffx.3743.1.S1_s_at--583--4271Chr04:4284349..4284373 (25 bp)
CCTCGAGCTGGATCTCAACATGCCG
LOC_Os04g08060
Target Sequence 
CCATGGAACCGGCAGCCGATGACAAGATCAAGCCGACCATCCCGGAGACAGCCGCCGCCGCCGCCGAGGAGAAGCCGCCC
AAGCCATCGCCGCCACGACCACCGGCCTCGAGGCCGATCGCCACCGATCCAACAGTGCTCGCGATCCCGGTGATCCCGAA
GCAAGAAGTGCTCGACGCCACCAACTCCGCCGCCATTGCCAGCGTCTCCAAGCAGCCACGTGTCCACGAGTGCTCCATCT
GCGGCGCCGAGTTCGCCTCCGGCCAGGCGCTCGGCGGCCACATGCGGCGGCACCGCCCGCTCATACCGGCGTCGGCGTCG
TCCGCGGTGGTGTCCGTGCTCGACGCCGTCGACGCGCCGAGGCAGAAGGAGAAGAGCCTCCTCGAGCTGGATCTCAACAT
GCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3743.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis