Browse Element(s) Details


Os.20108.3.S1_at

Description gb:AK069556.1
DB_XREF= gi:32979580
TID=Os.20108.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20108 (NCBI UniGene Cluster)
UG_TITLE=Hypothetical protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022G20, full insert sequence.
FL= gb:AK069556.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0803410/11Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07990Os.46306.1.S1_x_at4/114+4237922..4241014transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g08000OsAffx.25904.1.S1_at5/114+4247105..4256492retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08000OsAffx.21754.1.S1_x_at2/114+4247105..4256492retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08000OsAffx.9949.1.S1_at1/114+4247105..4256492retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08010OsAffx.25919.1.S1_at11/114+4257843..4258160hypothetical protein
LOC_Os04g08034Os.20108.3.S1_at10/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08034Os.6984.1.S1_at10/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08034Os.20108.1.S1_a_at9/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08034OsAffx.18365.1.S1_at1/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08060OsAffx.3743.1.S1_s_at11/114+4283477..4284505Zinc finger, C2H2 type family protein, expressed
LOC_Os04g08070Os.54504.1.S1_at10/114+4296256..4297594expressed protein
LOC_Os04g08070Os.54504.1.S1_x_at10/114+4296256..4297594expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0009960biological_processendosperm development
GO:0010048biological_processvernalization response
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20108.3.S1_at--573--5671Chr04:4272102..4272126 (25 bp)
GACATACACTGTACCTAATTGACCT
LOC_Os04g08034
Os.20108.3.S1_at--734--8751Chr04:4272135..4272159 (25 bp)
TGTATCAGGGTTGTGGGATCCAGCC
LOC_Os04g08034
Os.20108.3.S1_at--931--7971Chr04:4272150..4272174 (25 bp)
GGATCCAGCCCATGCAAACTAGCAT
LOC_Os04g08034
Os.20108.3.S1_at--556--4931Chr04:4272171..4272195 (25 bp)
GCATAAATTTTACGTACATGGCTTA
LOC_Os04g08034
Os.20108.3.S1_at--656--8471Chr04:4272189..4272213 (25 bp)
TGGCTTAAAAGCTCCATTTCTATTT
LOC_Os04g08034
Os.20108.3.S1_at--566--6811Chr04:4272239..4272263 (25 bp)
GTTTTAGAACCATTACTCTCTTGAA
LOC_Os04g08034
Os.20108.3.S1_at--897--9471Chr04:4272255..4272279 (25 bp)
TCTCTTGAAAGACGGTGTTGGGCAT
LOC_Os04g08034
Os.20108.3.S1_at--405--8871Chr04:4272279..4272303 (25 bp)
TGATGATGTGTTCTACACCCACTCC
LOC_Os04g08034
Os.20108.3.S1_at--926--3351NONE
CACCCACTCCACTATAAAGTCTTTT
NONE
Os.20108.3.S1_at--822--7531Chr04:4272319..4272343 (25 bp)
GTGGCTATAAATGTGTACTCATCTG
LOC_Os04g08034
Os.20108.3.S1_at--323--7011Chr04:4272333..4272357 (25 bp)
GTACTCATCTGTGTATTGTTTGTAA
LOC_Os04g08034
Target Sequence 
GACATACACTGTACCTAATTGACCTAGGTTTGATGTATCAGGGTTGTGGGATCCAGCCCATGCAAACTAGCATAAATTTT
ACGTACATGGCTTAAAAGCTCCATTTCTATTTAATATTGATTTAAGTGAAAATCTTTGTTTTAGAACCATTACTCTCTTG
AAAGACGGTGTTGGGCATGATGATGTGTTCTACACCCACTCCACTATAAAGTCTTTTGTGGCTATAAATGTGTACTCATC
TGTGTATTGTTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20108.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis