Browse Element(s) Details


OsAffx.25925.1.S1_at

Description tigr:9632.m00737
TID=OsAffx.25925.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0824011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08230OsAffx.14826.2.S1_at8/114+4377552..4380807hypothetical protein
LOC_Os04g08230OsAffx.14826.1.S1_at1/114+4377552..4380807hypothetical protein
LOC_Os04g08240OsAffx.25925.1.S1_at11/114+4384385..4385911hypothetical protein
LOC_Os04g08250OsAffx.13724.1.S1_at11/114+4388708..4390024hypothetical protein
LOC_Os04g08260OsAffx.13725.1.S1_at11/114+4391286..4391534hypothetical protein
LOC_Os04g08270Os.361.1.S1_at7/114+4393170..4406037limit dextrinase, putative, expressed
LOC_Os04g08280Os.55383.1.S1_at11/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed
LOC_Os04g08280Os.55383.1.S1_x_at11/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed
LOC_Os04g08280Os.47999.3.S1_x_at1/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25925.1.S1_at--455--2431Chr04:4384934..4384958 (25 bp)
AAAATACCAGACCAGAGGCAGGGAT
LOC_Os04g08240
OsAffx.25925.1.S1_at--180--8071Chr04:4384899..4384923 (25 bp)
GGAGAACGCACACGGTCACGGACAA
LOC_Os04g08240
OsAffx.25925.1.S1_at--346--9691Chr04:4384884..4384908 (25 bp)
TCACGGACAAGCGTGTGCTGTTCAA
LOC_Os04g08240
OsAffx.25925.1.S1_at--798--7791Chr04:4384681..4384705 (25 bp)
GGTCGTCCGTTCGACAAGAGCAAGG
LOC_Os04g08240
OsAffx.25925.1.S1_at--840--2911Chr04:4384660..4384684 (25 bp)
AAGGACGATGATCACTGGCGTTACA
LOC_Os04g08240
OsAffx.25925.1.S1_at--1074--3271Chr04:4384648..4384672 (25 bp)
CACTGGCGTTACAGGGAGGACGACA
LOC_Os04g08240
OsAffx.25925.1.S1_at--789--1671Chr04:4384600..4384624 (25 bp)
AGCCTCGAGAAGCACAGGGCGCACA
LOC_Os04g08240
OsAffx.25925.1.S1_at--201--2131Chr04:4384587..4384611 (25 bp)
ACAGGGCGCACAAGCTGCCGTTGCT
LOC_Os04g08240
OsAffx.25925.1.S1_at--512--4591Chr04:4384550..4384574 (25 bp)
GCGCACGCCCAGTTACGGTCACGAT
LOC_Os04g08240
OsAffx.25925.1.S1_at--788--1211Chr04:4384540..4384564 (25 bp)
AGTTACGGTCACGATCACGACGACG
LOC_Os04g08240
OsAffx.25925.1.S1_at--908--2031Chr04:4384506..4384530 (25 bp)
ACTATGATGGCAATGCCGATGCCGA
LOC_Os04g08240
Target Sequence 
AAAATACCAGACCAGAGGCAGGGATGGATATTTGCGGAGAACGCACACGGTCACGGACAAGCGTGTGCTGTTCAAGCTGC
TGGTGCTCGACGACGAGGAGAGCGGGAGGTGGAGGAAGAAGGAGGAGGAGGTCGGGGACGCGGCGGCGGCGGCGCTGTTC
GTCGGGGCGAACGCGTCGATGTGCGTGGCAGCGACGAGCGGCGGGGACCTCGCCGGCGGATGCATCTACTTCACCGACGA
CGACGTGGCGCGGGGTCGTCCGTTCGACAAGAGCAAGGACGATGATCACTGGCGTTACAGGGAGGACGACAGGGAGATCG
TCGCCGGCGTGTACAGCCTCGAGAAGCACAGGGCGCACAAGCTGCCGTTGCTCCAGCGGCGGCGGCGCACGCCCAGTTAC
GGTCACGATCACGACGACGACGACGATAACTATGATGGCAATGCCGATGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25925.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis