Browse Element(s) Details


OsAffx.25936.7.S1_s_at

Description gb:NM_184006.1
DB_XREF= gi:34895139
GEN=P0440D10.17
TID=OsAffx.25936.7
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0440D10.17 (P0440D10.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2995011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g0877011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g1152011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g1426011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g2761011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g4853011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g1984011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g3276011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g2389011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g2925011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g4202011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g0812011/11hypothetical protein
LOC_Os06g1601011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g2368011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g1385011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g4956011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g3044011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g2496011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g4586411/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g1689011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g2665011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g4225011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g1669011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g1126011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g1426011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g5006011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g1244011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g0432011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g2015011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g4907011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g3521011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g4499011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g4502011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g4147011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g0628010/11hypothetical protein
LOC_Os11g4308010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g3743010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g5923010/11retrotransposon protein, putative, unclassified
LOC_Os04g1195010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g2466010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g3378010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g3626010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g458909/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g228609/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g018509/11hypothetical protein
LOC_Os12g238009/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g187909/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g053908/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g242948/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g330708/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g624608/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g397408/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g043168/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g030308/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g360308/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g237708/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g378708/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g260208/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g288008/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g128308/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g250208/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g328108/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g402308/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g260708/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g093307/11hypothetical protein
LOC_Os09g042607/11retrotransposon protein, putative, unclassified
LOC_Os04g136007/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g364207/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g127307/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g166707/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g083907/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g055907/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g376307/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g340107/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g305507/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g128207/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g236106/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g292245/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g160405/11transposon protein, putative, unclassified
LOC_Os04g216705/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g637405/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g389205/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g290105/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g253403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g470703/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g239402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g222001/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29890Os.16031.1.S1_at11/112+17775171..17779646expressed protein
LOC_Os02g29900OsAffx.12283.1.S1_at11/112+17783307..17783663hypothetical protein
LOC_Os02g29910OsAffx.12284.1.S1_at11/112+17785321..17785560hypothetical protein
LOC_Os02g29910OsAffx.12284.1.S1_x_at11/112+17785321..17785560hypothetical protein
LOC_Os02g29920OsAffx.18122.1.S1_x_at1/112+17786702..17788467transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29930Os.10827.1.S1_x_at6/112+17789041..17790381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29930Os.46055.2.S1_x_at5/112+17789041..17790381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29940NANA2+17790935..17791576hypothetical protein
LOC_Os02g29950OsAffx.25936.7.S1_s_at11/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.1.S1_s_at11/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.2.S1_x_at8/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.5.S1_x_at4/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.1.S1_at1/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29960Os.18238.1.S1_at11/112+17799630..17803154Cytochrome P450 family protein, expressed
LOC_Os02g29960OsAffx.24503.1.S1_x_at11/112+17799630..17803154Cytochrome P450 family protein, expressed
LOC_Os02g29970OsAffx.24504.1.S1_at11/112+17804198..17804632hypothetical protein
LOC_Os02g29980NANA2+17807578..17807922glucan endo-1,3-beta-glucosidase 1 precursor, putative
LOC_Os02g29990NANA2+17816988..17817950retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30000OsAffx.31869.1.S1_at9/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.5.S1_x_at6/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.4.S1_at2/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.4.S1_x_at2/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.2.S1_at1/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.3.S1_s_at1/112+17818280..17819395retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25936.7.S1_s_at--259--78957Chr12:17316783..17316807 (25 bp)
GGTTAATTTACGACAGAGCTTCACT
LOC_Os12g29250
OsAffx.25936.7.S1_s_at--1046--103356Chr12:17316789..17316813 (25 bp)
TTTACGACAGAGCTTCACTGAGGTG
LOC_Os12g29250
OsAffx.25936.7.S1_s_at--1015--59164Chr12:17316798..17316822 (25 bp)
GAGCTTCACTGAGGTGGTTGACTAT
LOC_Os12g29250
OsAffx.25936.7.S1_s_at--230--96777Chr12:17316803..17316827 (25 bp)
TCACTGAGGTGGTTGACTATGTCAA
LOC_Os12g29250
OsAffx.25936.7.S1_s_at--816--107181Chr12:17316815..17316839 (25 bp)
TTGACTATGTCAACCGGTGTTTATG
LOC_Os12g29250
OsAffx.25936.7.S1_s_at--419--6780Chr12:17316821..17316845 (25 bp)
ATGTCAACCGGTGTTTATGGGCCCA
LOC_Os12g29250
OsAffx.25936.7.S1_s_at--441--26577Chr12:17316825..17316849 (25 bp)
CAACCGGTGTTTATGGGCCCATCAA
LOC_Os12g29250
OsAffx.25936.7.S1_s_at--299--75773Chr12:17316839..17316863 (25 bp)
GGGCCCATCAAGACAAGGAGTACAT
LOC_Os12g29250
OsAffx.25936.7.S1_s_at--209--35575Chr12:17316861..17316885 (25 bp)
CATCATGTGCGCACACAACCAAGAG
LOC_Os12g29250
OsAffx.25936.7.S1_s_at--1122--72968Chr12:17316867..17316970 (25 bp)
GTGCGCACACAACCAAGAGCGACAT
LOC_Os12g29250
OsAffx.25936.7.S1_s_at--477--21961Chr12:17316873..17316976 (25 bp)
ACACAACCAAGAGCGACATTGGATT
LOC_Os12g29250
Target Sequence 
GGTTAATTTACGACAGAGCTTCACTGAGGTGGTTGACTATGTCAACCGGTGTTTATGGGCCCATCAAGACAAGGAGTACA
TCATGTGCGCACACAACCAAGAGCGACATTGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25936.7.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis