Browse Element(s) Details


Os.18238.1.S1_at

Description gb:C98588
DB_XREF= gi:3761340
DB_XREF=C98588
CLONE=E0437_6Z
TID=Os.18238.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18238 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T45624 (A.thaliana) T45624 flavonoid 3-hydroxylase-like protein (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2996011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29890Os.16031.1.S1_at11/112+17775171..17779646expressed protein
LOC_Os02g29900OsAffx.12283.1.S1_at11/112+17783307..17783663hypothetical protein
LOC_Os02g29910OsAffx.12284.1.S1_at11/112+17785321..17785560hypothetical protein
LOC_Os02g29910OsAffx.12284.1.S1_x_at11/112+17785321..17785560hypothetical protein
LOC_Os02g29920OsAffx.18122.1.S1_x_at1/112+17786702..17788467transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29930Os.10827.1.S1_x_at6/112+17789041..17790381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29930Os.46055.2.S1_x_at5/112+17789041..17790381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29940NANA2+17790935..17791576hypothetical protein
LOC_Os02g29950OsAffx.25936.7.S1_s_at11/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.1.S1_s_at11/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.2.S1_x_at8/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.5.S1_x_at4/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.1.S1_at1/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29960Os.18238.1.S1_at11/112+17799630..17803154Cytochrome P450 family protein, expressed
LOC_Os02g29960OsAffx.24503.1.S1_x_at11/112+17799630..17803154Cytochrome P450 family protein, expressed
LOC_Os02g29970OsAffx.24504.1.S1_at11/112+17804198..17804632hypothetical protein
LOC_Os02g29980NANA2+17807578..17807922glucan endo-1,3-beta-glucosidase 1 precursor, putative
LOC_Os02g29990NANA2+17816988..17817950retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30000OsAffx.31869.1.S1_at9/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.5.S1_x_at6/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.4.S1_at2/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.4.S1_x_at2/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.2.S1_at1/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.3.S1_s_at1/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30010Os.53292.1.S1_at2/112+17823875..17826522transposon protein, putative, unclassified
LOC_Os02g30010Os.53292.1.S1_x_at1/112+17823875..17826522transposon protein, putative, unclassified
LOC_Os02g30010OsAffx.20733.1.A1_x_at1/112+17823875..17826522transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009411biological_processresponse to UV
GO:0009641biological_processshade avoidance
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009759biological_processindole glucosinolate biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0010114biological_processresponse to red light
GO:0005739cellular_componentmitochondrion
GO:0004497molecular_functionmonooxygenase activity
GO:0016709molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD or NADH as one donor, and incorporation of one atom of oxygen
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
GO:0046424molecular_functionferulate 5-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18238.1.S1_at--280--3091Chr02:17802984..17803008 (25 bp)
AATAATTCATGCACTGACGGGCCGC
LOC_Os02g29960
Os.18238.1.S1_at--347--9751Chr02:17802986..17803010 (25 bp)
TAATTCATGCACTGACGGGCCGCAT
LOC_Os02g29960
Os.18238.1.S1_at--455--1971Chr02:17802996..17803020 (25 bp)
ACTGACGGGCCGCATGCATGTATGC
LOC_Os02g29960
Os.18238.1.S1_at--895--8931Chr02:17802998..17803022 (25 bp)
TGACGGGCCGCATGCATGTATGCTC
LOC_Os02g29960
Os.18238.1.S1_at--30--7571Chr02:17803002..17803026 (25 bp)
GGGCCGCATGCATGTATGCTCGTAT
LOC_Os02g29960
Os.18238.1.S1_at--1045--4511Chr02:17803004..17803028 (25 bp)
GCCGCATGCATGTATGCTCGTATGT
LOC_Os02g29960
Os.18238.1.S1_at--115--651Chr02:17803009..17803033 (25 bp)
ATGCATGTATGCTCGTATGTGCGCT
LOC_Os02g29960
Os.18238.1.S1_at--459--751Chr02:17803013..17803037 (25 bp)
ATGTATGCTCGTATGTGCGCTCTCT
LOC_Os02g29960
Os.18238.1.S1_at--242--631Chr02:17803017..17803041 (25 bp)
ATGCTCGTATGTGCGCTCTCTCTCT
LOC_Os02g29960
Os.18238.1.S1_at--816--6411Chr02:17803094..17803118 (25 bp)
GATCTACACGCAGATGATAAACGGA
LOC_Os02g29960
Os.18238.1.S1_at--142--1851Chr02:17803101..17803125 (25 bp)
ACGCAGATGATAAACGGAGTACAGT
LOC_Os02g29960
Target Sequence 
AATAATTCATGCACTGACGGGCCGCATGCATGTATGCTCGTATGTGCGCTCTCTCTCTCTCTCTCTGAGTTCATAGTTAT
ATTTTACTGCAGAGTACTTGTTTATTTATCGATCTACACGCAGATGATAAACGGAGTACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis