Browse Element(s) Details


OsAffx.2595.1.S1_at

Description tigr:9630.m01227
TID=OsAffx.2595.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1333011/11Bet v I allergen family protein, putative
LOC_Os06g366701/11Bet v I allergen family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13300Os.20931.1.S1_s_at11/112+7083289..7087339Mitochondrial carrier protein, expressed
LOC_Os02g13300OsAffx.2594.1.S1_at11/112+7083289..7087339Mitochondrial carrier protein, expressed
LOC_Os02g13310Os.56322.1.S1_at11/112+7097062..7100591Associated with HOX family protein, expressed
LOC_Os02g13320NANA2+7105533..7106147hypothetical protein
LOC_Os02g13330OsAffx.2595.1.S1_at11/112+7111106..7111729Bet v I allergen family protein, putative
LOC_Os02g13340Os.24143.1.A1_at10/112+7115786..7119630pentatricopeptide, putative, expressed
LOC_Os02g13350OsAffx.12016.1.S1_at11/112+7123770..7126123hydrolase, NUDIX family protein, expressed
LOC_Os02g13360OsAffx.12017.1.S1_at11/112+7126765..7131311expressed protein
LOC_Os02g13370Os.52377.1.S1_s_at11/112+7132009..7133382expressed protein
LOC_Os02g13370Os.52377.1.S1_at7/112+7132009..7133382expressed protein
LOC_Os02g13380Os.4170.1.S1_at8/112+7135189..7138046Early nodulin 93, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2595.1.S1_at--618--9851Chr02:7111483..7111507 (25 bp)
TACAAGCACTTCATCAAGTCGTGCG
LOC_Os02g13330
OsAffx.2595.1.S1_at--992--3231Chr02:7111481..7111505 (25 bp)
CAAGCACTTCATCAAGTCGTGCGAG
LOC_Os02g13330
OsAffx.2595.1.S1_at--549--2711Chr02:7111480..7111504 (25 bp)
AAGCACTTCATCAAGTCGTGCGAGC
LOC_Os02g13330
OsAffx.2595.1.S1_at--1082--1491Chr02:7111479..7111503 (25 bp)
AGCACTTCATCAAGTCGTGCGAGCT
LOC_Os02g13330
OsAffx.2595.1.S1_at--758--5111Chr02:7111478..7111502 (25 bp)
GCACTTCATCAAGTCGTGCGAGCTC
LOC_Os02g13330
OsAffx.2595.1.S1_at--902--3311Chr02:7111477..7111501 (25 bp)
CACTTCATCAAGTCGTGCGAGCTCG
LOC_Os02g13330
OsAffx.2595.1.S1_at--760--2051Chr02:7111476..7111500 (25 bp)
ACTTCATCAAGTCGTGCGAGCTCGC
LOC_Os02g13330
OsAffx.2595.1.S1_at--931--8151Chr02:7111197..7111221 (25 bp)
GGAACACCGAGGAGGACACGCGCAT
LOC_Os02g13330
OsAffx.2595.1.S1_at--495--6191Chr02:7111186..7111210 (25 bp)
GAGGACACGCGCATGTTCACCGACA
LOC_Os02g13330
OsAffx.2595.1.S1_at--874--951Chr02:7111185..7111209 (25 bp)
AGGACACGCGCATGTTCACCGACAC
LOC_Os02g13330
OsAffx.2595.1.S1_at--109--4152Chr06:21556000..21556019 (20 bp)
CGCGCATGTTCACCGACACCGTCGT
LOC_Os06g36670
Target Sequence 
TACAAGCACTTCATCAAGTCGTGCGAGCTCGCCGCCGGGGACGGCGCCACCGTGGGGAGCGTCCGGGAGGTCGCCGTCGT
GTCGGGCCTCCCGGCGTCCACCAGCACCGAGCGCCTCGAGATCCTCGACGACGACCGCCACGTCCTCAGCTTCCGCGTCG
TCGGCGGCGACCACCGCCTCCGCAACTACCGCTCCGTCACCTCCGTCACCGAGTTCTCCTCCCCCTCCTCGCCGCCGCGG
CCGTACTGCGTCGTCGTCGAGTCCTACGTCGTCGACGTCCCCGAGGGGAACACCGAGGAGGACACGCGCATGTTCACCGA
CACCGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2595.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis