Browse Element(s) Details


OsAffx.25952.2.S1_at

Description tigr:9632.m00895
TID=OsAffx.25952.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1023010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10170OsAffx.25949.1.S1_at11/114+5484368..5484840hypothetical protein
LOC_Os04g10180OsAffx.25950.1.S1_at11/114+5485954..5487442hypothetical protein
LOC_Os04g10190NANA4+5488983..5491937retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10200Os.10703.2.S1_x_at1/114+5492254..5498352retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10210OsAffx.25951.1.S1_at10/114+5498787..5501220hypothetical protein
LOC_Os04g10219NANA4+5502856..5503567hypothetical protein
LOC_Os04g10230OsAffx.25952.2.S1_at10/114+5503908..5504930hypothetical protein
LOC_Os04g10240Os.12939.1.S1_s_at10/114+5506869..5510298expressed protein
LOC_Os04g10250OsAffx.14731.1.S1_at11/114+5514966..5518273hypothetical protein
LOC_Os04g10250OsAffx.14731.2.S1_at2/114+5514966..5518273hypothetical protein
LOC_Os04g10260OsAffx.25953.1.S1_at11/114+5519583..5525480hypothetical protein
LOC_Os04g10270Os.31312.5.S1_x_at5/114+5527714..5530826retrotransposon protein, putative, unclassified
LOC_Os04g10270Os.31312.2.S1_x_at4/114+5527714..5530826retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25952.2.S1_at--180--6851Chr04:5504051..5504075 (25 bp)
GTTTGTCCTAACCACTTCTCCAGCG
LOC_Os04g10230
OsAffx.25952.2.S1_at--830--1971Chr04:5504110..5504134 (25 bp)
ACTGCCATAGTGTAGTTCCTCGGTG
LOC_Os04g10230
OsAffx.25952.2.S1_at--89--10071Chr04:5504117..5504141 (25 bp)
TAGTGTAGTTCCTCGGTGGAGGCCT
LOC_Os04g10230
OsAffx.25952.2.S1_at--178--6231Chr04:5504135..5504159 (25 bp)
GAGGCCTGCGCGGTGCCGTGCGAAG
LOC_Os04g10230
OsAffx.25952.2.S1_at--901--391Chr04:5504355..5504379 (25 bp)
ATCAGCACCTCCTTCGTTGGTCATG
LOC_Os04g10230
OsAffx.25952.2.S1_at--107--6631NONE
GTTGGTCATGTCGTCCTCGATAATC
NONE
OsAffx.25952.2.S1_at--770--8711Chr04:5504706..5504726 (21 bp)
TGTCGTCCTCGATAATCTCCCGCAA
LOC_Os04g10230
OsAffx.25952.2.S1_at--740--9331Chr04:5504759..5504783 (25 bp)
TCGCCGGTGCTCAGACGAAGTCCGC
LOC_Os04g10230
OsAffx.25952.2.S1_at--397--7311Chr04:5504765..5504789 (25 bp)
GTGCTCAGACGAAGTCCGCCTCCTT
LOC_Os04g10230
OsAffx.25952.2.S1_at--741--9331Chr04:5504789..5504813 (25 bp)
TCGCCGGTGCTTAGACGAAGAGAAG
LOC_Os04g10230
OsAffx.25952.2.S1_at--719--1431Chr04:5504826..5504850 (25 bp)
AGAACAGAGAGAGACCGAGAGAAGA
LOC_Os04g10230
Target Sequence 
GTTTGTCCTAACCACTTCTCCAGCGCTCAACCATCTCTCCTTCCCCTTCGCCCACCATCACTGCCATAGTGTAGTTCCTC
GGTGGAGGCCTGCGCGGTGCCGTGCGAAGCCGGCGGTGGAGGACGTGGTAGACGACGAGAAGGAGAAGGAGACCTGGCGG
CGGGAGGACAAGCCCGAGGGGAAGGACGGAGGAGAGGAGGTGCTCGGGCGCGGGTGGTTCATGGTTGATGAGATTGGCAT
GGACATCCTCACCATCGCCTTGCCTGCTGTGCTCGCCCTCGCCACCGACCCCATCACGGCGCTCATCAGCACCTCCTTCG
TTGGTCATGTCGTCCTCGATAATCTCCCGCAACAGCTCGGCCCTCAACCCCTCGTCTGCCTCCTTCGCCGGTGCTCAGAC
GAAGTCCGCCTCCTTCGCCGGTGCTTAGACGAAGAGAAGGGGGAGATAAAGAGAACAGAGAGAGACCGAGAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25952.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis