Browse Element(s) Details


OsAffx.26001.2.S1_at

Description tigr:9639.m02458
TID=OsAffx.26001.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g409101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40840OsAffx.16811.2.S1_at10/113+22664724..22667796hypothetical protein
LOC_Os03g40860OsAffx.25460.1.S1_at11/113+22676530..22676787hypothetical protein
LOC_Os03g40870OsAffx.22722.1.S1_x_at1/113+22677622..22684053retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40880OsAffx.20354.1.S1_at5/113+22685239..22687576retrotransposon protein, putative, unclassified
LOC_Os03g40900NANA3+22691305..22691808hypothetical protein
LOC_Os03g40910OsAffx.26001.2.S1_at1/113+22692358..22693179hypothetical protein
LOC_Os03g40920Os.1151.2.S2_a_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.2.S1_a_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.2.S1_at11/113+22693876..22697964expressed protein
LOC_Os03g40920OsAffx.3466.1.S1_s_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.2.S2_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.1.S1_a_at11/113+22693876..22697964expressed protein
LOC_Os03g40920OsAffx.3466.1.S1_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.1.S1_at10/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.1.S1_x_at10/113+22693876..22697964expressed protein
LOC_Os03g40930OsAffx.13276.1.S1_at11/113+22699652..22701524Lipase, putative, expressed
LOC_Os03g40950OsAffx.13277.1.S1_at11/113+22713060..22713704hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26001.2.S1_at--630--4532Chr11:15269619..15269643 (25 bp)
GCCCGCTCGTCTGCGATGCCGACGC
NONE
OsAffx.26001.2.S1_at--399--5791Chr11:15268413..15268437 (25 bp)
GACGACAAAGACACAAAAGAGCAAA
NONE
OsAffx.26001.2.S1_at--515--11Chr11:15268406..15268430 (25 bp)
AAGACACAAAAGAGCAAAGGTTGCA
NONE
OsAffx.26001.2.S1_at--359--1011Chr11:15268389..15268413 (25 bp)
AGGTTGCAGAACAGAGTGGTACCCA
NONE
OsAffx.26001.2.S1_at--250--6671Chr11:15268387..15268411 (25 bp)
GTTGCAGAACAGAGTGGTACCCAGG
NONE
OsAffx.26001.2.S1_at--922--10711Chr11:15268386..15268410 (25 bp)
TTGCAGAACAGAGTGGTACCCAGGC
NONE
OsAffx.26001.2.S1_at--686--9031Chr11:15268385..15268409 (25 bp)
TGCAGAACAGAGTGGTACCCAGGCC
NONE
OsAffx.26001.2.S1_at--387--5051Chr11:15268384..15268408 (25 bp)
GCAGAACAGAGTGGTACCCAGGCCG
NONE
OsAffx.26001.2.S1_at--1132--1411Chr11:15268382..15268406 (25 bp)
AGAACAGAGTGGTACCCAGGCCGGC
NONE
OsAffx.26001.2.S1_at--738--5491Chr11:15268381..15268405 (25 bp)
GAACAGAGTGGTACCCAGGCCGGCC
NONE
OsAffx.26001.2.S1_at--663--3411Chr11:15268378..15268402 (25 bp)
CAGAGTGGTACCCAGGCCGGCCGAC
NONE
Target Sequence 
GCCCGCTCGTCTGCGATGCCGACGCCGTCATCTCCNCGGTGCNCGCGACCCANNTCCCCGACCAGACCAAGCTCATCGAN
GCCATCAAGGAGGCCGGCGGCGACCACGTCCGGAGNTGACGACAAAGACACAAAAGAGCAAAGGTTGCAGAACAGAGTGG
TACCCAGGCCGGCCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26001.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis