Browse Element(s) Details


OsAffx.2602.1.S1_at

Description tigr:9640.m01849
TID=OsAffx.2602.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to class III chitinase homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1875011/11hypothetical protein
LOC_Os12g187808/11hypothetical protein
LOC_Os03g289696/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18710OsAffx.7633.1.S1_at10/1112+10812452..10814218hypothetical protein
LOC_Os12g18710OsAffx.25317.1.S1_at1/1112+10812452..10814218hypothetical protein
LOC_Os12g18710OsAffx.20972.1.S1_x_at1/1112+10812452..10814218hypothetical protein
LOC_Os12g18729Os.22682.1.S1_a_at11/1112+10819906..10831099expressed protein
LOC_Os12g18729Os.53843.1.S1_at11/1112+10819906..10831099expressed protein
LOC_Os12g18750OsAffx.2602.1.S1_at11/1112+10838903..10840765hypothetical protein
LOC_Os12g18750Os.5300.1.S1_at1/1112+10838903..10840765hypothetical protein
LOC_Os12g18760Os.7839.1.S1_at11/1112+10845644..10853690expressed protein
LOC_Os12g18770Os.35068.1.S1_at11/1112+10859656..10869587Oxysterol-binding protein, expressed
LOC_Os12g18770Os.7268.1.S1_at1/1112+10859656..10869587Oxysterol-binding protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2602.1.S1_at--1027--3516Chr12:10873747..10873771 (25 bp)
CATGTTGACATGTTTTATGTTTATA
LOC_Os12g18780
OsAffx.2602.1.S1_at--894--10116Chr12:10873762..10873786 (25 bp)
TATGTTTATAAGCATCATTGATAGA
LOC_Os12g18780
OsAffx.2602.1.S1_at--233--6496Chr12:10873781..10873805 (25 bp)
GATAGACAACTTCGAGAGTTTAATG
LOC_Os12g18780
OsAffx.2602.1.S1_at--939--10336Chr12:10873799..10873819 (21 bp)
TTTAATGATAGATTTGATGAGTCCA
LOC_Os12g18780
OsAffx.2602.1.S1_at--769--62912Chr12:10866966..10866986 (21 bp)
GATGAGTCCAATTTTTTGAGTTCTG
NONE
OsAffx.2602.1.S1_at--216--7275Chr12:10866967..10866991 (25 bp)
GTCCAATTTTTTGAGTTCTGTAAGA
NONE
OsAffx.2602.1.S1_at--330--103111Chr12:10874127..10874151 (25 bp)
TTTCAACTTTGAATACCCTTTGCTG
LOC_Os12g18780
OsAffx.2602.1.S1_at--718--3137Chr12:10874137..10874161 (25 bp)
GAATACCCTTTGCTGAAATCCTGGC
LOC_Os12g18780
OsAffx.2602.1.S1_at--853--1815Chr12:10874141..10874165 (25 bp)
ACCCTTTGCTGAAATCCTGGCTCCG
LOC_Os12g18780
OsAffx.2602.1.S1_at--866--4111Chr12:10839216..10839240 (25 bp)
CGCTACGGCCGATACTCGTCGACAT
LOC_Os12g18750
OsAffx.2602.1.S1_at--937--9911Chr12:10839213..10839237 (25 bp)
TACGGCCGATACTCGTCGACATCTC
LOC_Os12g18750
Target Sequence 
CATGTTGACATGTTTTATGTTTATAAGCATCATTGATAGACAACTTCGAGAGTTTAATGATAGATTTGATGAGTCCAATT
TTTTGAGTTCTGTAAGATTTTTTTTCAACTTTGAATACCCTTTGCTGAAATCCTGGCTCCGCCACTGCCGACGACCCGGG
CCTTGCCGTCTACTAGGGCCGCCACAAGGAAGAAGGCTCCCTGAGAGAGGCCTGCGACACCGGCCACTACACCACCGTCA
TCATCACCTTCTACAACGTCTTCCGCTACGGCCGATACTCGTCGACATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis