Browse Element(s) Details


OsAffx.2603.1.S1_at

Description tigr:9630.m01289
TID=OsAffx.2603.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1393011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13910OsAffx.24238.1.S1_s_at11/112+7558777..7568835retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g13910OsAffx.19542.3.S1_x_at2/112+7558777..7568835retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g13910OsAffx.21754.1.S1_x_at2/112+7558777..7568835retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g13910OsAffx.10609.1.S1_at1/112+7558777..7568835retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g13920OsAffx.13875.1.S1_at1/112+7578016..7579076retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g13930OsAffx.2603.1.S1_at11/112+7582245..7586531expressed protein
LOC_Os02g13930OsAffx.15672.1.S1_x_at1/112+7582245..7586531expressed protein
LOC_Os02g13940NANA2+7591255..7591569hypothetical protein
LOC_Os02g13950Os.50488.1.S1_at11/112+7594952..7599868NHL repeat-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2603.1.S1_at--848--1651Chr02:7582887..7582911 (25 bp)
AGCGCCTCCGTGCTTCCGAAGAGGA
LOC_Os02g13930
OsAffx.2603.1.S1_at--1106--6171Chr02:7582793..7582817 (25 bp)
GAGGAGCACGCAGAGTCGATACTCA
LOC_Os02g13930
OsAffx.2603.1.S1_at--1014--311Chr02:7582665..7582799 (25 bp)
ATACTCATGGCGACCGAGGAATGCA
LOC_Os02g13930
OsAffx.2603.1.S1_at--804--6291Chr02:7582640..7582664 (25 bp)
GATGATCAGAGCTACACGCACGACG
LOC_Os02g13930
OsAffx.2603.1.S1_at--755--1271Chr02:7582594..7582618 (25 bp)
AGATCTCCGGAGAGCAGATTGCTGC
LOC_Os02g13930
OsAffx.2603.1.S1_at--616--6591Chr02:7582578..7582602 (25 bp)
GATTGCTGCGGATGACACGTACTAC
LOC_Os02g13930
OsAffx.2603.1.S1_at--833--4091Chr02:7582554..7582578 (25 bp)
CGACAGCTACTATTACATGGACGGC
LOC_Os02g13930
OsAffx.2603.1.S1_at--255--871Chr02:7582484..7582508 (25 bp)
ATGGCGGCAGCGGACTTCCACGACG
LOC_Os02g13930
OsAffx.2603.1.S1_at--832--1931Chr02:7582462..7582486 (25 bp)
ACGGCAACCAGCTTTCACCGGAGCA
LOC_Os02g13930
OsAffx.2603.1.S1_at--890--1771Chr02:7582446..7582470 (25 bp)
ACCGGAGCATCAGCGCGTGTTGTAC
LOC_Os02g13930
OsAffx.2603.1.S1_at--794--4091Chr02:7582293..7582317 (25 bp)
CGACGTAGACGAGGAGCAACTGCAA
LOC_Os02g13930
Target Sequence 
AGCGCCTCCGTGCTTCCGAAGAGGACGACGTCGACGTCGGCGACGCTCGCGGCGCGCCGGGGCGATGCTACGACGACGAT
GTCGCGGAGGACGGGAGGAGCACGCAGAGTCGATACTCATGGCGACCGAGGAATGCAGATGATCAGAGCTACACGCACGA
CGACGACACGCCGGCGGCGCAAGAGATCTCCGGAGAGCAGATTGCTGCGGATGACACGTACTACGACAGCTACTATTACA
TGGACGGCGAGTACGGCGGCGCATACGACGAGGAGGAGCACCAACAAGATGACATGGCGGCAGCGGACTTCCACGACGGC
AACCAGCTTTCACCGGAGCATCAGCGCGTGTTGTACCGCTTGTTCGGCGAGGCAGACGGCAGCACGCGCCAGGAAGAGCA
AGAAGCGGCGGCGCAGGGCTCCGGAGGAGAGCACGTGCCACCGGAGGAGGACTCGTACGAGGCCGCCGCCGTGCTCGCCG
GCGACGACGTAGACGAGGAGCAACTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis