Browse Element(s) Details


OsAffx.26048.1.S1_at

Description tigr:9632.m01501
TID=OsAffx.26048.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1669011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16649OsAffx.31869.1.S1_at8/114+9039331..9040089retrotransposon protein, putative, unclassified
LOC_Os04g16649OsAffx.31869.5.S1_x_at2/114+9039331..9040089retrotransposon protein, putative, unclassified
LOC_Os04g16649OsAffx.31869.3.S1_x_at1/114+9039331..9040089retrotransposon protein, putative, unclassified
LOC_Os04g16649OsAffx.31869.3.S1_s_at1/114+9039331..9040089retrotransposon protein, putative, unclassified
LOC_Os04g16660NANA4+9043913..9044311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16670OsAffx.26047.1.S1_at11/114+9051867..9052495hypothetical protein
LOC_Os04g16680Os.12696.1.S1_at10/114+9054999..9057731Sedoheptulose-1,7-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os04g16690OsAffx.26048.1.S1_at11/114+9061173..9062040hypothetical protein
LOC_Os04g16700Os.45173.1.S1_x_at1/114+9064905..9066756retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16710NANA4+9068679..9069332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16720OsAffx.32221.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720Os.26596.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32220.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32219.1.S1_x_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32241.1.S1_x_at10/114+9081553..9085412ribosomal protein S15 containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26048.1.S1_at--462--8511Chr04:9061212..9061236 (25 bp)
TGGCAACGACGGCAGTGCTCGCGAG
LOC_Os04g16690
OsAffx.26048.1.S1_at--311--9331Chr04:9061230..9061254 (25 bp)
TCGCGAGCACGCGTGGATTCGACGA
LOC_Os04g16690
OsAffx.26048.1.S1_at--127--7771Chr04:9061289..9061313 (25 bp)
GGTGACAGCAGCACTCGCGGGCACA
LOC_Os04g16690
OsAffx.26048.1.S1_at--253--9351Chr04:9061303..9061327 (25 bp)
TCGCGGGCACATCCAACAATGGTGA
LOC_Os04g16690
OsAffx.26048.1.S1_at--919--8231Chr04:9061308..9061332 (25 bp)
GGCACATCCAACAATGGTGACGGAT
LOC_Os04g16690
OsAffx.26048.1.S1_at--329--8951Chr04:9061325..9061349 (25 bp)
TGACGGATCTGCAACAGCGGCTGCG
LOC_Os04g16690
OsAffx.26048.1.S1_at--503--5111Chr04:9061353..9061567 (25 bp)
GCACTCACCGACAGATCTGATTGTA
LOC_Os04g16690
OsAffx.26048.1.S1_at--88--5571Chr04:9061898..9061922 (25 bp)
GAAAGAGCTACCCTACATATGAGAA
LOC_Os04g16690
OsAffx.26048.1.S1_at--387--5951Chr04:9061918..9061942 (25 bp)
GAGAATAGACAAAACCAACCTGTTG
LOC_Os04g16690
OsAffx.26048.1.S1_at--905--4371Chr04:9061932..9061956 (25 bp)
CCAACCTGTTGATGGCGATGACATG
LOC_Os04g16690
OsAffx.26048.1.S1_at--546--6231Chr04:9061942..9061966 (25 bp)
GATGGCGATGACATGGATGATAAAA
LOC_Os04g16690
Target Sequence 
TGGCAACGACGGCAGTGCTCGCGAGCACGCGTGGATTCGACGAGGGTGGCTGCGGCGACGCTCGCGGACGCATTGGGGGT
GACAGCAGCACTCGCGGGCACATCCAACAATGGTGACGGATCTGCAACAGCGGCTGCGACAGCACTCACCGACAGATCTG
ATTGTAGAAAGAGCTACCCTACATATGAGAATAGACAAAACCAACCTGTTGATGGCGATGACATGGATGATAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis