Browse Element(s) Details


OsAffx.26059.1.S1_at

Description tigr:9632.m01640
TID=OsAffx.26059.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1822011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g18170Os.54151.1.S1_x_at4/114+10019868..10021709retrotransposon protein, putative, unclassified
LOC_Os04g18170Os.48015.1.A1_x_at2/114+10019868..10021709retrotransposon protein, putative, unclassified
LOC_Os04g18180OsAffx.31757.1.S1_at3/114+10025842..10026693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g18180OsAffx.31757.2.S1_at2/114+10025842..10026693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g18190OsAffx.26058.1.S1_at11/114+10030787..10031582Zinc knuckle family protein
LOC_Os04g18200Os.13550.1.S1_at11/114+10037029..10040474Dihydrodipicolinate synthase, chloroplast precursor, putative, expressed
LOC_Os04g18220OsAffx.26059.1.S1_at11/114+10042568..10043041hypothetical protein
LOC_Os04g18230NANA4+10054327..10055040retrotransposon, putative, centromere-specific
LOC_Os04g18244OsAffx.8479.1.S1_at2/114+10060266..10070180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g18244Os.46314.2.S1_x_at1/114+10060266..10070180retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26059.1.S1_at--215--1131Chr04:10042984..10043008 (25 bp)
AGTGCCGTCGCGGTGTACAACCTAG
LOC_Os04g18220
OsAffx.26059.1.S1_at--69--7451Chr04:10042972..10042996 (25 bp)
GTGTACAACCTAGTGCAACGAGCTC
LOC_Os04g18220
OsAffx.26059.1.S1_at--103--3711Chr04:10042963..10042987 (25 bp)
CTAGTGCAACGAGCTCGGTGCGCAG
LOC_Os04g18220
OsAffx.26059.1.S1_at--441--7291Chr04:10042946..10042970 (25 bp)
GTGCGCAGCGGCAGTGTTCATGCCA
LOC_Os04g18220
OsAffx.26059.1.S1_at--441--3951Chr04:10042938..10042962 (25 bp)
CGGCAGTGTTCATGCCAGCGGCGTT
LOC_Os04g18220
OsAffx.26059.1.S1_at--421--9251Chr04:10042828..10042852 (25 bp)
TCCTACTCACATGCGGCGGCGTTGA
LOC_Os04g18220
OsAffx.26059.1.S1_at--643--4071Chr04:10042726..10042750 (25 bp)
CGAGCTAGCTGTGGCATGCTGTACA
LOC_Os04g18220
OsAffx.26059.1.S1_at--1--6191Chr04:10042676..10042700 (25 bp)
GAGGAGCACGAGAGCCGATGTCGAT
LOC_Os04g18220
OsAffx.26059.1.S1_at--546--8051Chr04:10042643..10042667 (25 bp)
GGAGATGCGTCGACAGGGCTGGAGA
LOC_Os04g18220
OsAffx.26059.1.S1_at--606--5991Chr04:10042605..10042629 (25 bp)
GAGAGACTGACGAGTGGTCCCCATG
LOC_Os04g18220
OsAffx.26059.1.S1_at--987--3851Chr04:10042599..10042623 (25 bp)
CTGACGAGTGGTCCCCATGCCATTT
LOC_Os04g18220
Target Sequence 
AGTGCCGTCGCGGTGTACAACCTAGTGCAACGAGCTCGGTGCGCAGCGGCAGTGTTCATGCCAGCGGCGTTGCGGAGGGG
CAGCGGCGTTGCGGAGGGGCAGCGGCGCGGCAGTGCTCCTCCAGCTCATCTTTCTCGTCGTCCTCGACTCCCACTCTCCT
ACTCACATGCGGCGGCGTTGAGGAGGGGCGGCGGCGTGGCGGTGCTCCTCCGGCTCTTCTTCCTCGCCAACCTCCACTCC
CGCCGGCGGTGGCGGCGCCGAGCTAGCTGTGGCATGCTGTACACCCCGGCGGCGCTGTGGGTGGCGATGAGGAGCACGAG
AGCCGATGTCGATGGGGTGCAGGAGATGCGTCGACAGGGCTGGAGAGATGAAGAGGAGGGAGAGACTGACGAGTGGTCCC
CATGCCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis