Browse Element(s) Details


OsAffx.26090.1.S1_at

Description tigr:9632.m02022
TID=OsAffx.26090.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2194011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21890OsAffx.3850.1.S1_at11/114+12371400..12374198NB-ARC domain containing protein, expressed
LOC_Os04g21900OsAffx.13914.1.S1_at11/114+12375742..12378182hypothetical protein
LOC_Os04g21910OsAffx.13915.1.S1_at11/114+12381592..12383153pentatricopeptide, putative
LOC_Os04g21920NANA4+12387667..12388383transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21930Os.14491.2.S1_x_at2/114+12390837..12395176transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21930Os.47463.1.S1_x_at1/114+12390837..12395176transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21940OsAffx.26090.1.S1_at11/114+12399031..12399405hypothetical protein
LOC_Os04g21950Os.49656.1.S1_at11/114+12400846..12402244WRKY DNA binding domain containing protein, expressed
LOC_Os04g21960NANA4+12406392..12409955retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g21970OsAffx.10633.1.S1_at9/114+12410233..12411306retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g21980NANA4+12412930..12413217hypothetical protein
LOC_Os04g21990NANA4+12422992..12428167retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26090.1.S1_at--233--3692Chr04:12399067..12399091 (25 bp)
CTATCCGAGACCAAATTGCCCTTGC
LOC_Os04g21940
OsAffx.26090.1.S1_at--918--9251Chr04:12399070..12399094 (25 bp)
TCCGAGACCAAATTGCCCTTGCCTT
LOC_Os04g21940
OsAffx.26090.1.S1_at--543--10391Chr04:12399136..12399160 (25 bp)
TTTTCCTCATCCTCTGGCGCGGCGG
LOC_Os04g21940
OsAffx.26090.1.S1_at--341--2311Chr04:12399173..12399197 (25 bp)
AAAGGCAGCACCGAGCACGTGCGTT
LOC_Os04g21940
OsAffx.26090.1.S1_at--754--5051Chr04:12399177..12399201 (25 bp)
GCAGCACCGAGCACGTGCGTTGGCT
LOC_Os04g21940
OsAffx.26090.1.S1_at--1072--4072Chr12:8955384..8955405 (22 bp)
CGAGCACGTGCGTTGGCTGGCGGCG
NONE
OsAffx.26090.1.S1_at--959--7611Chr04:12399222..12399246 (25 bp)
GGGAAAGAATGCTGCGACGCAGATA
LOC_Os04g21940
OsAffx.26090.1.S1_at--836--2931Chr04:12399254..12399278 (25 bp)
AAGGCAGCGACGTGCGTGTGCTTCA
LOC_Os04g21940
OsAffx.26090.1.S1_at--437--1911Chr04:12399263..12399287 (25 bp)
ACGTGCGTGTGCTTCAGGCGGCGGC
LOC_Os04g21940
OsAffx.26090.1.S1_at--502--4591Chr04:12399313..12399337 (25 bp)
GCGCACGTGTGCATCACTGGTGGCA
LOC_Os04g21940
OsAffx.26090.1.S1_at--1088--1951Chr04:12399328..12399352 (25 bp)
ACTGGTGGCAGTAGCACAGATGTGA
LOC_Os04g21940
Target Sequence 
CTATCCGAGACCAAATTGCCCTTGCCTTCCTCTATCCCCCATCTTCTCTTCCAACTCCGGCTATCCCTGTTTTCCTCATC
CTCTGGCGCGGCGGTGCAGATGGGGAAAAGGCAGCACCGAGCACGTGCGTTGGCTGGCGGCGGTGGTGCAAATGGGGGAA
AGAATGCTGCGACGCAGATAGGGGGAGAAGGCAGCGACGTGCGTGTGCTTCAGGCGGCGGCGGCGCAGATGGGGAAGAAG
GGAGCGGCGCACGTGTGCATCACTGGTGGCAGTAGCACAGATGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis