Browse Element(s) Details


OsAffx.26113.1.S1_at

Description tigr:9632.m02154
TID=OsAffx.26113.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2322011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g23210OsAffx.3866.1.S1_at11/114+13177443..13191375expressed protein
LOC_Os04g23210Os.14884.1.S1_s_at11/114+13177443..13191375expressed protein
LOC_Os04g23220OsAffx.26113.1.S1_at11/114+13195559..13200242expressed protein
LOC_Os04g23220OsAffx.26113.1.S1_x_at11/114+13195559..13200242expressed protein
LOC_Os04g23230OsAffx.3867.1.S1_at10/114+13220820..13221702hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26113.1.S1_at--64--1751Chr04:13196109..13196133 (25 bp)
ACCTCAAGAGGAAGACGCCCACCAG
LOC_Os04g23220
OsAffx.26113.1.S1_at--873--9711Chr04:13196106..13196130 (25 bp)
TCAAGAGGAAGACGCCCACCAGTTC
LOC_Os04g23220
OsAffx.26113.1.S1_at--520--6191Chr04:13196102..13196126 (25 bp)
GAGGAAGACGCCCACCAGTTCACCA
LOC_Os04g23220
OsAffx.26113.1.S1_at--822--10511Chr04:13196084..13196108 (25 bp)
TTCACCACCAACAAGCGACCGCAAG
LOC_Os04g23220
OsAffx.26113.1.S1_at--816--7211Chr04:13195942..13195966 (25 bp)
GTCCCGAGCGACATAACCCACGAAG
LOC_Os04g23220
OsAffx.26113.1.S1_at--136--4591Chr04:13195935..13195959 (25 bp)
GCGACATAACCCACGAAGGCGGCGG
LOC_Os04g23220
OsAffx.26113.1.S1_at--825--8431Chr04:13195680..13195704 (25 bp)
TGGCGGAGGTGTTTGAACCGGCGGC
LOC_Os04g23220
OsAffx.26113.1.S1_at--298--4691Chr04:13195657..13195681 (25 bp)
GCGGCAACGGTCAAAAATGGCGGGA
LOC_Os04g23220
OsAffx.26113.1.S1_at--1118--2431Chr04:13195644..13195668 (25 bp)
AAAATGGCGGGAAGGCTGTAGTGTT
LOC_Os04g23220
OsAffx.26113.1.S1_at--446--8411Chr04:13195595..13195619 (25 bp)
GGCCCACGAGTCAGTAGGGTTCATG
LOC_Os04g23220
OsAffx.26113.1.S1_at--175--3351Chr04:13195591..13195615 (25 bp)
CACGAGTCAGTAGGGTTCATGGGCT
LOC_Os04g23220
Target Sequence 
ACCTCAAGAGGAAGACGCCCACCAGTTCACCACCAACAAGCGACCGCAAGCGCGCACGGGCACGGCGCAGCGCCGGCAAT
GGCCACAGCCTCGACCTCAACCTCAACCTCTTCGCCCACGACGACGACGACAACGACGCCGGAGACGTTGACGACGACGA
CGACGGCGTCCCGAGCGACATAACCCACGAAGGCGGCGGCGACGACTCCGGCGAGCACGGCCACTCGCACCACCGCCTCC
TCCTCGAGTCCATCGCCACGCGCGTGGTCACCCTCGACGGCGACCACCACGGCGCCGCGGCCGCCGTCCGCGAGAGGCTG
TCGGGGCGGCTCGACGGCGGCGGGCGGGAGCTGCGCGTCGACGGCGAGGCGGCGGCGGCGCTGGCGGCGGCGTCGGGGCA
CTTCGTCGACGAGGTGATGGAGCGGTGGGTGGCGGAGGTGTTTGAACCGGCGGCGGCAACGGTCAAAAATGGCGGGAAGG
CTGTAGTGTTGGGGGTGGGGCCCAGTGGAGGTGGGGCCCACGAGTCAGTAGGGTTCATGGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis