Browse Element(s) Details


OsAffx.26113.1.S1_x_at

Description tigr:9632.m02154
TID=OsAffx.26113.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2322011/11expressed protein
LOC_Os05g265801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g23210OsAffx.3866.1.S1_at11/114+13177443..13191375expressed protein
LOC_Os04g23210Os.14884.1.S1_s_at11/114+13177443..13191375expressed protein
LOC_Os04g23220OsAffx.26113.1.S1_at11/114+13195559..13200242expressed protein
LOC_Os04g23220OsAffx.26113.1.S1_x_at11/114+13195559..13200242expressed protein
LOC_Os04g23230OsAffx.3867.1.S1_at10/114+13220820..13221702hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26113.1.S1_x_at--872--9711Chr04:13196106..13196130 (25 bp)
TCAAGAGGAAGACGCCCACCAGTTC
LOC_Os04g23220
OsAffx.26113.1.S1_x_at--519--6191Chr04:13196102..13196126 (25 bp)
GAGGAAGACGCCCACCAGTTCACCA
LOC_Os04g23220
OsAffx.26113.1.S1_x_at--227--1871Chr04:13195977..13196001 (25 bp)
ACGACGCCGGAGACGTTGACGACGA
LOC_Os04g23220
OsAffx.26113.1.S1_x_at--225--1874Chr12:17177436..17177462 (23 bp)
ACGACGACGGCGTCCCGAGCGACAT
NONE
OsAffx.26113.1.S1_x_at--815--7211Chr04:13195942..13195966 (25 bp)
GTCCCGAGCGACATAACCCACGAAG
LOC_Os04g23220
OsAffx.26113.1.S1_x_at--126--1651Chr04:13195936..13195960 (25 bp)
AGCGACATAACCCACGAAGGCGGCG
LOC_Os04g23220
OsAffx.26113.1.S1_x_at--320--351Chr04:13195930..13195954 (25 bp)
ATAACCCACGAAGGCGGCGGCGACG
LOC_Os04g23220
OsAffx.26113.1.S1_x_at--413--6111Chr04:13195864..13195888 (25 bp)
GAGTCCATCGCCACGCGCGTGGTCA
LOC_Os04g23220
OsAffx.26113.1.S1_x_at--1079--3311Chr04:13195711..13195735 (25 bp)
CACTTCGTCGACGAGGTGATGGAGC
LOC_Os04g23220
OsAffx.26113.1.S1_x_at--447--8411Chr04:13195595..13195619 (25 bp)
GGCCCACGAGTCAGTAGGGTTCATG
LOC_Os04g23220
OsAffx.26113.1.S1_x_at--174--3351Chr04:13195591..13195615 (25 bp)
CACGAGTCAGTAGGGTTCATGGGCT
LOC_Os04g23220
Target Sequence 
TCAAGAGGAAGACGCCCACCAGTTCACCACCAACAAGCGACCGCAAGCGCGCACGGGCACGGCGCAGCGCCGGCAATGGC
CACAGCCTCGACCTCAACCTCAACCTCTTCGCCCACGACGACGACGACAACGACGCCGGAGACGTTGACGACGACGACGA
CGGCGTCCCGAGCGACATAACCCACGAAGGCGGCGGCGACGACTCCGGCGAGCACGGCCACTCGCACCACCGCCTCCTCC
TCGAGTCCATCGCCACGCGCGTGGTCACCCTCGACGGCGACCACCACGGCGCCGCGGCCGCCGTCCGCGAGAGGCTGTCG
GGGCGGCTCGACGGCGGCGGGCGGGAGCTGCGCGTCGACGGCGAGGCGGCGGCGGCGCTGGCGGCGGCGTCGGGGCACTT
CGTCGACGAGGTGATGGAGCGGTGGGTGGCGGAGGTGTTTGAACCGGCGGCGGCAACGGTCAAAAATGGCGGGAAGGCTG
TAGTGTTGGGGGTGGGGCCCAGTGGAGGTGGGGCCCACGAGTCAGTAGGGTTCATGGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26113.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis