Browse Element(s) Details


OsAffx.26125.1.S1_at

Description tigr:9632.m02265
TID=OsAffx.26125.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2427411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24240Os.47463.1.S1_x_at6/114+13851290..13856604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g24240Os.14491.2.S1_x_at5/114+13851290..13856604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g24250OsAffx.26124.1.S1_at11/114+13870621..13870890hypothetical protein
LOC_Os04g24260OsAffx.20604.2.S1_at2/114+13872416..13876888retrotransposon protein, putative, unclassified
LOC_Os04g24260OsAffx.10371.1.S1_at1/114+13872416..13876888retrotransposon protein, putative, unclassified
LOC_Os04g24274OsAffx.26126.1.S1_at11/114+13878191..13883296expressed protein
LOC_Os04g24274OsAffx.26125.1.S1_at11/114+13878191..13883296expressed protein
LOC_Os04g24274Os.20069.2.S1_at1/114+13878191..13883296expressed protein
LOC_Os04g24290OsAffx.3879.1.S1_x_at1/114+13888243..13890347Protein kinase domain containing protein
LOC_Os04g24300OsAffx.3879.1.S1_x_at11/114+13894936..13900029Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26125.1.S1_at--372--8371Chr04:13878984..13879003 (20 bp)
GGCGAAGTATACTCCTACAGTCCTG
LOC_Os04g24274
OsAffx.26125.1.S1_at--8--1151Chr04:13878997..13879021 (25 bp)
AGTCCTGCTATTACTCTCGGTAGTA
LOC_Os04g24274
OsAffx.26125.1.S1_at--1060--6931Chr04:13879016..13879040 (25 bp)
GTAGTAGAGCATCATCAGTGGAATC
LOC_Os04g24274
OsAffx.26125.1.S1_at--811--10791Chr04:13879046..13879110 (25 bp)
TTGTTCTAAGGTTTCGTTGCGTTGC
LOC_Os04g24274
OsAffx.26125.1.S1_at--1041--6671Chr04:13879106..13879130 (25 bp)
GTTGCTGCGGCCAACGACACGGCGA
LOC_Os04g24274
OsAffx.26125.1.S1_at--1057--2171Chr04:13879122..13879146 (25 bp)
ACACGGCGAGGCAACTTAATCAGAC
LOC_Os04g24274
OsAffx.26125.1.S1_at--118--6951Chr04:13879591..13879615 (25 bp)
GTAGTTTTACCGGAGCTTTCTGATG
LOC_Os04g24274
OsAffx.26125.1.S1_at--1153--6091Chr04:13879629..13879653 (25 bp)
GAGTGAGCGAGCATGGTTCGACAAA
LOC_Os04g24274
OsAffx.26125.1.S1_at--526--4051Chr04:13879669..13879693 (25 bp)
CGATGTGGACTGAAAAACGGCGATT
LOC_Os04g24274
OsAffx.26125.1.S1_at--383--2391Chr04:13879683..13879707 (25 bp)
AAACGGCGATTTCTGTGTCTCGCGC
LOC_Os04g24274
OsAffx.26125.1.S1_at--867--7271Chr04:13879715..13879739 (25 bp)
GTGCCTCGACGGAAACCTCTACAGC
LOC_Os04g24274
Target Sequence 
GGCGAAGTATACTCCTACAGTCCTGCTATTACTCTCGGTAGTAGAGCATCATCAGTGGAATCTGAATTTGTTCTAAGGTT
TCGTTGCGTTGCTGCGGCCAACGACACGGCGAGGCAACTTAATCAGACTGCAATGACTACATATTGGCACAATATATATG
AAGTGGGGCCTGTAGTTTTACCGGAGCTTTCTGATGGTAGGGAGGAGACGAGTGAGCGAGCATGGTTCGACAAAGGCAAG
GGCGAGCAGCGATGTGGACTGAAAAACGGCGATTTCTGTGTCTCGCGCATTGCTCGTGCCTCGACGGAAACCTCTACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis