Browse Element(s) Details


OsAffx.26126.1.S1_at

Description tigr:9632.m02266
TID=OsAffx.26126.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2427411/11expressed protein
LOC_Os12g308402/11hypothetical protein
LOC_Os02g135001/11Transposable element protein, putative, MuDR
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24240Os.47463.1.S1_x_at6/114+13851290..13856604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g24240Os.14491.2.S1_x_at5/114+13851290..13856604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g24250OsAffx.26124.1.S1_at11/114+13870621..13870890hypothetical protein
LOC_Os04g24260OsAffx.20604.2.S1_at2/114+13872416..13876888retrotransposon protein, putative, unclassified
LOC_Os04g24260OsAffx.10371.1.S1_at1/114+13872416..13876888retrotransposon protein, putative, unclassified
LOC_Os04g24274OsAffx.26126.1.S1_at11/114+13878191..13883296expressed protein
LOC_Os04g24274OsAffx.26125.1.S1_at11/114+13878191..13883296expressed protein
LOC_Os04g24274Os.20069.2.S1_at1/114+13878191..13883296expressed protein
LOC_Os04g24290OsAffx.3879.1.S1_x_at1/114+13888243..13890347Protein kinase domain containing protein
LOC_Os04g24300OsAffx.3879.1.S1_x_at11/114+13894936..13900029Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26126.1.S1_at--707--1291Chr04:13882647..13882671 (25 bp)
AGATGCTTCGTCTGTCCTAACATTG
LOC_Os04g24274
OsAffx.26126.1.S1_at--497--5351Chr04:13882819..13882843 (25 bp)
GAAGATCTTCTATCGGTTCGACGAT
LOC_Os04g24274
OsAffx.26126.1.S1_at--312--6091Chr04:13882887..13882911 (25 bp)
GAGTACGAGCACCAGGTTCAGTCCA
LOC_Os04g24274
OsAffx.26126.1.S1_at--487--6751Chr04:13882902..13882926 (25 bp)
GTTCAGTCCACTAGCTTACACTGGA
LOC_Os04g24274
OsAffx.26126.1.S1_at--681--314Chr04:13882944..13882968 (25 bp)
ATACCTGAATGGTCTGATCGTCCCA
LOC_Os04g24274
OsAffx.26126.1.S1_at--156--8854Chr04:13882958..13882982 (25 bp)
TGATCGTCCCAAATGCGGTTGTAGA
LOC_Os04g24274
OsAffx.26126.1.S1_at--772--6031Chr04:13882981..13883005 (25 bp)
GAGATCGCTGCCAGGTTGCAACATC
LOC_Os04g24274
OsAffx.26126.1.S1_at--49--6671Chr04:13882995..13883019 (25 bp)
GTTGCAACATCCTTCTCACAAGATA
LOC_Os04g24274
OsAffx.26126.1.S1_at--683--6471Chr04:13883032..13883056 (25 bp)
GATACTTTGTCTGTCCCAACATAGA
LOC_Os04g24274
OsAffx.26126.1.S1_at--488--7471Chr04:13883170..13883194 (25 bp)
GTGTGCATTTACTTCATGGATCGAC
LOC_Os04g24274
OsAffx.26126.1.S1_at--1161--791Chr04:13883195..13883219 (25 bp)
ATGGTCAGCCCGACGTATGAAAGCG
LOC_Os04g24274
Target Sequence 
AGATGCTTCGTCTGTCCTAACATTGTCGATGATGATTTCGTTGAAGAAGACCGCAAATGTAGCTACGTAAAGTGGATCGA
TACGGTGCGAAGATCTTCTATCGGTTCGACGATAACTCAACCTGAGACGACCACACAATTCATTCAAGCATGGATGGAGT
ACGAGCACCAGGTTCAGTCCACTAGCTTACACTGGAGATCAAATCCATTAGGTATACCTGAATGGTCTGATCGTCCCAAA
TGCGGTTGTAGAGATCGCTGCCAGGTTGCAACATCCTTCTCACAAGATACATATGGCAGGCGATACTTTGTCTGTCCCAA
CATAGACGACTTCGTTGGGAATCCAAGGATGTGTGCATTTACTTCATGGATCGACATGGTCAGCCCGACGTATGAAAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis