Browse Element(s) Details


OsAffx.2617.1.S1_at

Description tigr:9630.m01412
TID=OsAffx.2617.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1512011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15060OsAffx.12048.1.S1_at10/112+8396789..8399605Zinc finger, C3HC4 type family protein
LOC_Os02g15070Os.13907.1.S1_at7/112+8401196..8403194Glutelin type-B 7 precursor, putative, expressed
LOC_Os02g15070Os.11489.4.S1_x_at1/112+8401196..8403194Glutelin type-B 7 precursor, putative, expressed
LOC_Os02g15080NANA2+8405379..8405966Zinc finger, C3HC4 type family protein
LOC_Os02g15090Os.14012.1.S1_at8/112+8406655..8408688Glutelin type-B 2 precursor, putative, expressed
LOC_Os02g15100NANA2+8411433..8411966Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15110NANA2+8417084..8417584Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15120OsAffx.2617.1.S1_at11/112+8422924..8423808Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15130NANA2+8428944..8429273hypothetical protein
LOC_Os02g15140Os.55155.1.S1_at11/112+8433457..8436693expressed protein
LOC_Os02g15150Os.11489.4.S1_x_at2/112+8446600..8448583Glutelin type-B 7 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2617.1.S1_at--1152--6991Chr02:8423061..8423085 (25 bp)
GTACGGGGTGATACTCTACTTCAAC
LOC_Os02g15120
OsAffx.2617.1.S1_at--105--8371Chr02:8423116..8423140 (25 bp)
GGCGTGCACCGGACTTCGGGCGGCG
LOC_Os02g15120
OsAffx.2617.1.S1_at--580--4551Chr02:8423206..8423230 (25 bp)
GCGCTGGCGGCCATTCCGGTGTTCA
LOC_Os02g15120
OsAffx.2617.1.S1_at--964--4671Chr02:8423212..8423236 (25 bp)
GCGGCCATTCCGGTGTTCAGGTTCA
LOC_Os02g15120
OsAffx.2617.1.S1_at--309--8431Chr02:8423214..8423238 (25 bp)
GGCCATTCCGGTGTTCAGGTTCAAG
LOC_Os02g15120
OsAffx.2617.1.S1_at--906--4431Chr02:8423215..8423239 (25 bp)
GCCATTCCGGTGTTCAGGTTCAAGG
LOC_Os02g15120
OsAffx.2617.1.S1_at--808--71Chr02:8423218..8423242 (25 bp)
ATTCCGGTGTTCAGGTTCAAGGCGT
LOC_Os02g15120
OsAffx.2617.1.S1_at--958--9271Chr02:8423220..8423244 (25 bp)
TCCGGTGTTCAGGTTCAAGGCGTCG
LOC_Os02g15120
OsAffx.2617.1.S1_at--379--8791Chr02:8423225..8423249 (25 bp)
TGTTCAGGTTCAAGGCGTCGGCGTC
LOC_Os02g15120
OsAffx.2617.1.S1_at--994--3851Chr02:8423293..8423317 (25 bp)
CTGAGCGGCATGCAGGACGGCGACG
LOC_Os02g15120
OsAffx.2617.1.S1_at--1151--8351Chr02:8423439..8423463 (25 bp)
GGCGAAACCACCCTGCCTGAAGGCG
LOC_Os02g15120
Target Sequence 
GTACGGGGTGATACTCTACTTCAACTACCTGTACGTGCGGTGGAGCGGCCGCGACGGCGTGCACCGGACTTCGGGCGGCG
GCGGCGGCGGAGGGCGTGGAGCGGCGGCGAGGAAGAGGGGCGGCGGCGGCGGCCTCGACAAGGCGGCGCTGGCGGCCATT
CCGGTGTTCAGGTTCAAGGCGTCGGCGTCGGCGGCGGCGCTCGGCGGCGGCGAGGCGGAGTGCGCGGTGTGCCTGAGCGG
CATGCAGGACGGCGACGCGGTGCGCGCGCTGCCCGGGTGCGGCCACGCCTTCCACGCCGGCTGCGTCGACGCCTGGCTCC
GCGCCCACGGCACCTGCCCCGTCTGCCGCGCGCGCCCCGCCGTGCCGCCTCCTCCGCCGGCGAAACCACCCTGCCTGAAG
GCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis