Browse Element(s) Details


OsAffx.12048.1.S1_at

Description tigr:9630.m01406
TID=OsAffx.12048.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL117188 RING-H2 finger protein RHA3b
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1506010/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15010OsAffx.12046.1.S1_at11/112+8375342..8375983Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15020NANA2+8380540..8381109Zinc finger, C3HC4 type family protein
LOC_Os02g15030OsAffx.24263.1.S1_at11/112+8385914..8386709hypothetical protein
LOC_Os02g15040OsAffx.12047.1.S1_at10/112+8390583..8392147hypothetical protein
LOC_Os02g15050Os.52655.1.S1_x_at2/112+8394293..8395144hypothetical protein
LOC_Os02g15050OsAffx.19426.1.S1_x_at1/112+8394293..8395144hypothetical protein
LOC_Os02g15060OsAffx.12048.1.S1_at10/112+8396789..8399605Zinc finger, C3HC4 type family protein
LOC_Os02g15070Os.13907.1.S1_at7/112+8401196..8403194Glutelin type-B 7 precursor, putative, expressed
LOC_Os02g15070Os.11489.4.S1_x_at1/112+8401196..8403194Glutelin type-B 7 precursor, putative, expressed
LOC_Os02g15080NANA2+8405379..8405966Zinc finger, C3HC4 type family protein
LOC_Os02g15090Os.14012.1.S1_at8/112+8406655..8408688Glutelin type-B 2 precursor, putative, expressed
LOC_Os02g15100NANA2+8411433..8411966Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15110NANA2+8417084..8417584Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15120OsAffx.2617.1.S1_at11/112+8422924..8423808Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12048.1.S1_at--256--5692Chr02:8397745..8397769 (25 bp)
GACTTGCCCGATGTGCCGGTGCGAC
LOC_Os02g15060
OsAffx.12048.1.S1_at--557--4531Chr02:8397712..8397736 (25 bp)
GCCCCGGGAAGTGGCCGCGAAAGAG
LOC_Os02g15060
OsAffx.12048.1.S1_at--9--7771Chr02:8397660..8397681 (22 bp)
GGTGATGACGCCTTGCCGCCGGATA
LOC_Os02g15060
OsAffx.12048.1.S1_at--326--10691NONE
TTGCCGCCGGATAGGATAGCCCAGA
NONE
OsAffx.12048.1.S1_at--186--5231Chr02:8397117..8397141 (25 bp)
GAATATTCCCCCTAGATGATGGATG
LOC_Os02g15060
OsAffx.12048.1.S1_at--326--4211Chr02:8397109..8397133 (25 bp)
CCCCTAGATGATGGATGGATTAATC
LOC_Os02g15060
OsAffx.12048.1.S1_at--1087--9513Chr06:7219775..7220039 (25 bp)
TCTCACCATGCGAGAACAACGACGA
NONE
OsAffx.12048.1.S1_at--133--7651Chr02:8396968..8396992 (25 bp)
GGGATGCAAGCTCGGCTGCCGGCAA
LOC_Os02g15060
OsAffx.12048.1.S1_at--989--7691Chr02:8396862..8396886 (25 bp)
GGGTGGCGGCCAGCCCGAAGGCTAG
LOC_Os02g15060
OsAffx.12048.1.S1_at--1022--3311Chr02:8396849..8396873 (25 bp)
CCCGAAGGCTAGAGACGGCGGCAAC
LOC_Os02g15060
OsAffx.12048.1.S1_at--389--1451Chr02:8396820..8396844 (25 bp)
AGAAGGGACGGTGGCGAGCCCGGAG
LOC_Os02g15060
Target Sequence 
GACTTGCCCGATGTGCCGGTGCGACCTCTCGCCGCCCCGGGAAGTGGCCGCGAAAGAGGCCACGGCGGCGGAGACGGCGG
CGCCGCCGGGTGATGACGCCTTGCCGCCGGATAGGATAGCCCAGAGGGGAATATTCCCCCTAGATGATGGATGGATTAAT
CCGGCCGATTTGCCCGGATACAGCCGCCCGAGCGCTCGGGCGAGCGGGGCGAGCGACGAGGTGGGTCACGTCACCCCTCT
CACCATGCGAGAACAACGACGACGCGAGGGAGGCAGTGGGATGCAAGCTCGGCTGCCGGCAAGTGGGTGCGAGTGTGGTG
GCGGCAGCGGAAAGAAGGGGGGCAGCGAGCCCGAAGGTTGGAGGCGGCGGCAGCGGAAAGAAGGGGTGGCGGCCAGCCCG
AAGGCTAGAGACGGCGGCAACGGGAAGAAGGGACGGTGGCGAGCCCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis