Browse Element(s) Details


OsAffx.12047.1.S1_at

Description tigr:9630.m01404
TID=OsAffx.12047.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1504010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15000NANA2+8367352..8367987Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15010OsAffx.12046.1.S1_at11/112+8375342..8375983Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15020NANA2+8380540..8381109Zinc finger, C3HC4 type family protein
LOC_Os02g15030OsAffx.24263.1.S1_at11/112+8385914..8386709hypothetical protein
LOC_Os02g15040OsAffx.12047.1.S1_at10/112+8390583..8392147hypothetical protein
LOC_Os02g15050Os.52655.1.S1_x_at2/112+8394293..8395144hypothetical protein
LOC_Os02g15050OsAffx.19426.1.S1_x_at1/112+8394293..8395144hypothetical protein
LOC_Os02g15060OsAffx.12048.1.S1_at10/112+8396789..8399605Zinc finger, C3HC4 type family protein
LOC_Os02g15070Os.13907.1.S1_at7/112+8401196..8403194Glutelin type-B 7 precursor, putative, expressed
LOC_Os02g15070Os.11489.4.S1_x_at1/112+8401196..8403194Glutelin type-B 7 precursor, putative, expressed
LOC_Os02g15080NANA2+8405379..8405966Zinc finger, C3HC4 type family protein
LOC_Os02g15090Os.14012.1.S1_at8/112+8406655..8408688Glutelin type-B 2 precursor, putative, expressed
LOC_Os02g15100NANA2+8411433..8411966Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15110NANA2+8417084..8417584Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12047.1.S1_at--757--3311Chr02:8390794..8390818 (25 bp)
CACATGTTGCGAGGGTGCTCTGCCA
LOC_Os02g15040
OsAffx.12047.1.S1_at--66--7791Chr02:8390807..8390969 (25 bp)
GGTGCTCTGCCATCTCCAGGAGATT
LOC_Os02g15040
OsAffx.12047.1.S1_at--988--3811Chr02:8390813..8390975 (25 bp)
CTGCCATCTCCAGGAGATTTGGCTT
LOC_Os02g15040
OsAffx.12047.1.S1_at--176--2471Chr02:8390979..8391003 (25 bp)
AACACAAGCGAGATATACGGTCACA
LOC_Os02g15040
OsAffx.12047.1.S1_at--1025--9911Chr02:8390994..8391018 (25 bp)
TACGGTCACATTGTATTGGTCAATA
LOC_Os02g15040
OsAffx.12047.1.S1_at--225--371Chr02:8391050..8391074 (25 bp)
ATCAATGCAAAGCTACGATAGGACC
LOC_Os02g15040
OsAffx.12047.1.S1_at--68--5131Chr02:8391056..8391080 (25 bp)
GCAAAGCTACGATAGGACCATGGAG
LOC_Os02g15040
OsAffx.12047.1.S1_at--1002--1871Chr02:8391064..8391088 (25 bp)
ACGATAGGACCATGGAGGTGTTGAA
LOC_Os02g15040
OsAffx.12047.1.S1_at--826--6051Chr02:8391090..8391114 (25 bp)
GAGTTGGATATTAATGGGATGTCAC
LOC_Os02g15040
OsAffx.12047.1.S1_at--946--7651Chr02:8391105..8391129 (25 bp)
GGGATGTCACGTGAACAATTATTAA
LOC_Os02g15040
OsAffx.12047.1.S1_at--857--1391NONE
AGACTACAGCAAAAGAGCAATTCTA
NONE
Target Sequence 
CACATGTTGCGAGGGTGCTCTGCCATCTCCAGGAGATTTGGCTTGACAACACAAGCGAGATATACGGTCACATTGTATTG
GTCAATAAGACTATTAAAGTTGTTAGAAAGGCATCAAAATCAATGCAAAGCTACGATAGGACCATGGAGGTGTTGAAGGA
GTTGGATATTAATGGGATGTCACGTGAACAATTATTAAACAATGAAAAATCGAAACAAGCTGAGCACAAGCAGCCGAAAG
ACTACAGCAAAAGAGCAATTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis