Browse Element(s) Details


Os.11489.4.S1_x_at

Description gb:BI801677
DB_XREF= gi:16574381
DB_XREF=H057B10
CLONE=H057B10
TID=Os.11489.4
CNT=6
FEA=EST
TIER=Stack
STK=6
UG=Os.11489 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for glutelin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g151787/11Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g151697/11Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g151502/11Glutelin type-B 7 precursor, putative, expressed
LOC_Os02g150701/11Glutelin type-B 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15150Os.11489.4.S1_x_at2/112+8446600..8448583Glutelin type-B 7 precursor, putative, expressed
LOC_Os02g15160Os.54642.1.S1_at9/112+8453871..8455935F-box domain containing protein, expressed
LOC_Os02g15169Os.11489.3.S1_x_at11/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.11489.1.S1_a_at11/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.11489.4.S1_x_at7/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.15950.1.S1_at1/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169OsAffx.2517.1.S1_at1/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178Os.11489.1.S1_a_at11/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178Os.11489.3.S1_x_at11/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178Os.11489.4.S1_x_at7/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178OsAffx.2517.1.S1_at1/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15190NANA2+8470287..8473936retrotransposon protein, putative, unclassified
LOC_Os02g15200OsAffx.24266.1.S1_at11/112+8479274..8479606hypothetical protein
LOC_Os02g15210NANA2+8481007..8481772hypothetical protein
LOC_Os02g15220Os.7796.1.S1_at11/112+8490617..8498387Bromodomain containing protein, expressed
LOC_Os02g15220Os.7796.2.S1_a_at11/112+8490617..8498387Bromodomain containing protein, expressed
LOC_Os02g15220Os.7796.2.S1_at3/112+8490617..8498387Bromodomain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11489.4.S1_x_at--346--9813Chr02:8466587..8466611 (25 bp)
TAACTTTGGAAAGACTGTGTTTGAT
LOC_Os02g15178
Os.11489.4.S1_x_at--1122--8652Chr02:8466602..8466626 (25 bp)
TGTGTTTGATGGTGTCCTTCGCCCA
LOC_Os02g15178
Os.11489.4.S1_x_at--758--7432Chr02:8466603..8466627 (25 bp)
GTGTTTGATGGTGTCCTTCGCCCAG
LOC_Os02g15178
Os.11489.4.S1_x_at--719--8772Chr02:8466604..8466628 (25 bp)
TGTTTGATGGTGTCCTTCGCCCAGG
LOC_Os02g15178
Os.11489.4.S1_x_at--1057--6852Chr02:8466605..8466629 (25 bp)
GTTTGATGGTGTCCTTCGCCCAGGA
LOC_Os02g15178
Os.11489.4.S1_x_at--1031--7452Chr02:8466613..8466637 (25 bp)
GTGTCCTTCGCCCAGGACAATTATT
LOC_Os02g15178
Os.11489.4.S1_x_at--1106--7252Chr02:8466615..8466639 (25 bp)
GTCCTTCGCCCAGGACAATTATTGA
LOC_Os02g15178
Os.11489.4.S1_x_at--33--10792Chr07:13386546..13386957 (25 bp)
TTGATCATTCCACAACATTATGCTG
NONE
Os.11489.4.S1_x_at--350--10671Chr02:8448187..8448211 (25 bp)
TTCCACAACATTATGCTGTCTTGAA
LOC_Os02g15150
Os.11489.4.S1_x_at--935--4271NONE
CCTGCCAGTTGATGTAGTGGCTAAT
NONE
Os.11489.4.S1_x_at--619--4351NONE
CCAGTTGATGTAGTGGCTAATGCGT
NONE
Target Sequence 
TAACTTTGGAAAGACTGTGTTTGATGGTGTCCTTCGCCCAGGACAATTATTGATCATTCCACAACATTATGCTGTCTTGA
AGAAANCNNNNNNNNANGNNNNCCANNNNNNNNNANNNNANNNNAACGCTANNNCNTNNNNNNNCNNCCTTGCAGGGAAA
AACTCAGTATTCCGTGCCCTGCCAGTTGATGTAGTGGCTAATGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11489.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis