Browse Element(s) Details


Os.15950.1.S1_at

Description gb:BI800747
DB_XREF= gi:16573451
DB_XREF=H023F11
CLONE=H023F11
TID=Os.15950.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.15950 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g151691/11Glutelin type-B 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15140Os.55155.1.S1_at11/112+8433457..8436693expressed protein
LOC_Os02g15150Os.11489.4.S1_x_at2/112+8446600..8448583Glutelin type-B 7 precursor, putative, expressed
LOC_Os02g15160Os.54642.1.S1_at9/112+8453871..8455935F-box domain containing protein, expressed
LOC_Os02g15169Os.11489.3.S1_x_at11/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.11489.1.S1_a_at11/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.11489.4.S1_x_at7/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.15950.1.S1_at1/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169OsAffx.2517.1.S1_at1/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178Os.11489.1.S1_a_at11/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178Os.11489.3.S1_x_at11/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178Os.11489.4.S1_x_at7/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178OsAffx.2517.1.S1_at1/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15190NANA2+8470287..8473936retrotransposon protein, putative, unclassified
LOC_Os02g15200OsAffx.24266.1.S1_at11/112+8479274..8479606hypothetical protein
LOC_Os02g15210NANA2+8481007..8481772hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15950.1.S1_at--171--1371NONE
AGAGCACGGTCCTGCACTCCTAGAT
NONE
Os.15950.1.S1_at--196--1491NONE
AGCACGGTCCTGCACTCCTAGATGT
NONE
Os.15950.1.S1_at--667--7791NONE
GGTCCTGCACTCCTAGATGTTCAAA
NONE
Os.15950.1.S1_at--693--9271NONE
TCCTGCACTCCTAGATGTTCAAACA
NONE
Os.15950.1.S1_at--1079--3271NONE
CAAACAATACTACACCAGGATTATC
NONE
Os.15950.1.S1_at--692--2671NONE
AAGCGAGACTTCAGATAATTTAATT
NONE
Os.15950.1.S1_at--855--8791NONE
TAATTTAATTGAGAACTATATCGGC
NONE
Os.15950.1.S1_at--288--31NONE
ATTGAGAACTATATCGGCTAGAGTA
NONE
Os.15950.1.S1_at--829--5471Chr02:8458735..8458761 (25 bp)
GAACTATATCGGCTAGAGTAAAATA
LOC_Os02g15169
Os.15950.1.S1_at--682--2451NONE
AACACCCACAAGTATAACACTTGTG
NONE
Os.15950.1.S1_at--994--9811NONE
TAACACTTGTGTGATTCTATTCAGA
NONE
Target Sequence 
AGAGCACGGTCCTGCACTCCTAGATGTTCAAACAAACAATACTACACCAGGATTATCGAATGAGTCCGAAAGCGAGACTT
CAGATAATTTAATTGAGAACTATATCGGCTAGAGTAAAATAAAACACCCACAAGTATAACACTTGTGTGATTCTATTCAG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis