Browse Element(s) Details


Os.55155.1.S1_at

Description gb:AK107597.1
DB_XREF= gi:32992806
TID=Os.55155.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55155 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-B01, full insert sequence.
FL= gb:AK107597.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1514011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15090Os.14012.1.S1_at8/112+8406655..8408688Glutelin type-B 2 precursor, putative, expressed
LOC_Os02g15100NANA2+8411433..8411966Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15110NANA2+8417084..8417584Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15120OsAffx.2617.1.S1_at11/112+8422924..8423808Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15130NANA2+8428944..8429273hypothetical protein
LOC_Os02g15140Os.55155.1.S1_at11/112+8433457..8436693expressed protein
LOC_Os02g15150Os.11489.4.S1_x_at2/112+8446600..8448583Glutelin type-B 7 precursor, putative, expressed
LOC_Os02g15160Os.54642.1.S1_at9/112+8453871..8455935F-box domain containing protein, expressed
LOC_Os02g15169Os.11489.3.S1_x_at11/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.11489.1.S1_a_at11/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.11489.4.S1_x_at7/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.15950.1.S1_at1/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169OsAffx.2517.1.S1_at1/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55155.1.S1_at--360--5911Chr02:8436101..8436125 (25 bp)
GAGCTCACTGCTACCAACGAGAAGT
LOC_Os02g15140
Os.55155.1.S1_at--988--6171Chr02:8436140..8436164 (25 bp)
GAGGAGTTGACCACGGCGAACACCA
LOC_Os02g15140
Os.55155.1.S1_at--977--5491Chr02:8436157..8436181 (25 bp)
GAACACCAACAACGAAAGCCTGCGC
LOC_Os02g15140
Os.55155.1.S1_at--147--2671Chr02:8436172..8436196 (25 bp)
AAGCCTGCGCCTTCTCATTAAAGAG
LOC_Os02g15140
Os.55155.1.S1_at--710--10291Chr02:8436261..8436285 (25 bp)
TTTATGCCGGGCTGAAGGAGAACTT
LOC_Os02g15140
Os.55155.1.S1_at--284--2991Chr02:8436296..8436320 (25 bp)
AATGAGGTGGCGAAGCAACTTGGTC
LOC_Os02g15140
Os.55155.1.S1_at--904--5091Chr02:8436340..8436364 (25 bp)
GCACTTCGATGATGTCTCGCTACTA
LOC_Os02g15140
Os.55155.1.S1_at--207--4851Chr02:8436358..8436382 (25 bp)
GCTACTAGCGTCCATTGGCGAGCTA
LOC_Os02g15140
Os.55155.1.S1_at--312--7251Chr02:8436401..8436425 (25 bp)
GTCCCCGCTGACATCATCCAGAAAG
LOC_Os02g15140
Os.55155.1.S1_at--970--4971Chr02:8436441..8436465 (25 bp)
GCATCGCCCTCAAGACTGGAGCCTG
LOC_Os02g15140
Os.55155.1.S1_at--537--4131Chr02:8436639..8436663 (25 bp)
CGCTTTCTAGTGCTGTAGTGACTTA
LOC_Os02g15140
Target Sequence 
GAGCTCACTGCTACCAACGAGAAGTTAAGCAAACTCAAGGAGGAGTTGACCACGGCGAACACCAACAACGAAAGCCTGCG
CCTTCTCATTAAAGAGAATTCGGAAATGCACCAAGAGGGTCAGAAGGCCCTAGCGGAGGAGAAGAGCAAAAGGGAGGCCC
TTTATGCCGGGCTGAAGGAGAACTTCTTTGCCTTCAATGAGGTGGCGAAGCAACTTGGTCGTGGGGTGCAGCCGCCACCG
CACTTCGATGATGTCTCGCTACTAGCGTCCATTGGCGAGCTAGTTGGCGAGATGGAGAAGGTCCCCGCTGACATCATCCA
GAAAGCTGACTGGGACACCCGCATCGCCCTCAAGACTGGAGCCTGCCACACCCTTGCTTGTATCTCGTCCAAGCATCCAG
AGCTGGACCTCAACAAGGAGGTCCACGAGGGTGTGGCTGAGGAGGAGAGGGAAAAGCTCATGGATCAACTTGAGAAGACT
GGCGAGGCGGTGGCTAGCTTCTATCTCGACTAGTAATTTTAGGCAATCTTTTAAAAGTCGCTTTCTAGTGCTGTAGTGAC
TTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis