Browse Element(s) Details


Os.11489.1.S1_a_at

Description gb:AK107343.1
DB_XREF= gi:32992552
TID=Os.11489.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11489 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for glutelin
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-G05, full insert sequence.
FL= gb:AK107343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1517811/11Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g1516911/11Glutelin type-B 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15150Os.11489.4.S1_x_at2/112+8446600..8448583Glutelin type-B 7 precursor, putative, expressed
LOC_Os02g15160Os.54642.1.S1_at9/112+8453871..8455935F-box domain containing protein, expressed
LOC_Os02g15169Os.11489.3.S1_x_at11/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.11489.1.S1_a_at11/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.11489.4.S1_x_at7/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.15950.1.S1_at1/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169OsAffx.2517.1.S1_at1/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178Os.11489.1.S1_a_at11/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178Os.11489.3.S1_x_at11/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178Os.11489.4.S1_x_at7/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178OsAffx.2517.1.S1_at1/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15190NANA2+8470287..8473936retrotransposon protein, putative, unclassified
LOC_Os02g15200OsAffx.24266.1.S1_at11/112+8479274..8479606hypothetical protein
LOC_Os02g15210NANA2+8481007..8481772hypothetical protein
LOC_Os02g15220Os.7796.1.S1_at11/112+8490617..8498387Bromodomain containing protein, expressed
LOC_Os02g15220Os.7796.2.S1_a_at11/112+8490617..8498387Bromodomain containing protein, expressed
LOC_Os02g15220Os.7796.2.S1_at3/112+8490617..8498387Bromodomain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11489.1.S1_a_at--820--10212Chr02:8466506..8466530 (25 bp)
TATTCTCTCGCCGTTCTGGAACGTC
LOC_Os02g15178
Os.11489.1.S1_a_at--1089--92Chr02:8466507..8466531 (25 bp)
ATTCTCTCGCCGTTCTGGAACGTCA
LOC_Os02g15178
Os.11489.1.S1_a_at--578--10552Chr02:8466508..8466532 (25 bp)
TTCTCTCGCCGTTCTGGAACGTCAA
LOC_Os02g15178
Os.11489.1.S1_a_at--836--7812Chr02:8466545..8466569 (25 bp)
GGTCTATATGATTCAAGGGCGATCT
LOC_Os02g15178
Os.11489.1.S1_a_at--779--7152Chr02:8466546..8466570 (25 bp)
GTCTATATGATTCAAGGGCGATCTC
LOC_Os02g15178
Os.11489.1.S1_a_at--688--3692Chr02:8466548..8466572 (25 bp)
CTATATGATTCAAGGGCGATCTCGA
LOC_Os02g15178
Os.11489.1.S1_a_at--362--10192Chr02:8466549..8466573 (25 bp)
TATATGATTCAAGGGCGATCTCGAG
LOC_Os02g15178
Os.11489.1.S1_a_at--540--8832Chr02:8466553..8466577 (25 bp)
TGATTCAAGGGCGATCTCGAGTTCA
LOC_Os02g15178
Os.11489.1.S1_a_at--708--6552Chr02:8466554..8466578 (25 bp)
GATTCAAGGGCGATCTCGAGTTCAA
LOC_Os02g15178
Os.11489.1.S1_a_at--580--132Chr02:8466555..8466579 (25 bp)
ATTCAAGGGCGATCTCGAGTTCAAG
LOC_Os02g15178
Os.11489.1.S1_a_at--388--10512Chr02:8466556..8466580 (25 bp)
TTCAAGGGCGATCTCGAGTTCAAGT
LOC_Os02g15178
Target Sequence 
TATTCTCTCGCCGTTCTGGAACGTCAATGCTCATAGTTTGGTCTATATGATTCAAGGGCGATCTCGAGTTCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11489.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis