Browse Element(s) Details


Os.7796.2.S1_a_at

Description gb:BI306222
DB_XREF= gi:14981544
DB_XREF=NL_3_M21
CLONE=NL_3_M21
TID=Os.7796.2
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.7796 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172113.1 (A.thaliana) Ring3-like bromodomain protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1522011/11Bromodomain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15178Os.11489.1.S1_a_at11/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178Os.11489.3.S1_x_at11/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178Os.11489.4.S1_x_at7/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178OsAffx.2517.1.S1_at1/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15190NANA2+8470287..8473936retrotransposon protein, putative, unclassified
LOC_Os02g15200OsAffx.24266.1.S1_at11/112+8479274..8479606hypothetical protein
LOC_Os02g15210NANA2+8481007..8481772hypothetical protein
LOC_Os02g15220Os.7796.1.S1_at11/112+8490617..8498387Bromodomain containing protein, expressed
LOC_Os02g15220Os.7796.2.S1_a_at11/112+8490617..8498387Bromodomain containing protein, expressed
LOC_Os02g15220Os.7796.2.S1_at3/112+8490617..8498387Bromodomain containing protein, expressed
LOC_Os02g15230Os.7804.1.S1_at11/112+8501518..8504975GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g15240OsAffx.13097.1.S1_s_at11/112+8508503..8515678hypothetical protein
LOC_Os02g15240Os.46613.1.S2_at4/112+8508503..8515678hypothetical protein
LOC_Os02g15250OsAffx.12050.1.S1_at11/112+8516794..8518231Late embryogenesis abundant protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7796.2.S1_a_at--524--2191Chr02:8492362..8492488 (25 bp)
ACAACCAAGTCAAGAGCCTAATATT
LOC_Os02g15220
Os.7796.2.S1_a_at--63--3111Chr02:8492471..8492493 (23 bp)
CAAGTCAAGAGCCTAATATTGGTGT
LOC_Os02g15220
Os.7796.2.S1_a_at--1130--7071Chr02:8492472..8492496 (25 bp)
GTCAAGAGCCTAATATTGGTGTAAA
LOC_Os02g15220
Os.7796.2.S1_a_at--186--7731Chr02:8492489..8492510 (22 bp)
GGTGTAAAATCTCCAAAGCAAAATT
LOC_Os02g15220
Os.7796.2.S1_a_at--941--31Chr02:8492624..8492648 (25 bp)
ATTGTGGATGAGAAATTAGCTACTT
LOC_Os02g15220
Os.7796.2.S1_a_at--696--8691Chr02:8492650..8492674 (25 bp)
TGTGCCAGAACAAGCTGATAATAAT
LOC_Os02g15220
Os.7796.2.S1_a_at--1068--10011Chr02:8492704..8492728 (25 bp)
TAGCAGCTCCAGCAGTGATACAGGA
LOC_Os02g15220
Os.7796.2.S1_a_at--335--5071Chr02:8492706..8492730 (25 bp)
GCAGCTCCAGCAGTGATACAGGATC
LOC_Os02g15220
Os.7796.2.S1_a_at--535--1591Chr02:8492708..8492732 (25 bp)
AGCTCCAGCAGTGATACAGGATCCT
LOC_Os02g15220
Os.7796.2.S1_a_at--704--1311Chr02:8492884..8492908 (25 bp)
AGATGGATCAGATGCCGCCAATTCA
LOC_Os02g15220
Os.7796.2.S1_a_at--431--6251Chr02:8492885..8492909 (25 bp)
GATGGATCAGATGCCGCCAATTCAT
LOC_Os02g15220
Target Sequence 
ACAACCAAGTCAAGAGCCTAATATTGGTGTAAAATCTCCAAAGCAAAATTTGATTGTGGATGAGAAATTAGCTACTTTTG
TGCCAGAACAAGCTGATAATAATGGACAAAATGCAAGTAGATTGAGCAGCTTTAGCAGCTCCAGCAGTGATACAGGATCC
TTTTTTAGTGATTCAGACAGTGATAGCTCCTTTTCAGATGGATCAGATGCCGCCAATTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7796.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis