Browse Element(s) Details


OsAffx.26199.2.S1_at

Description tigr:9640.m00272
TID=OsAffx.26199.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0358011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03540Os.8596.1.S1_at2/1112+1404375..1408357expressed protein
LOC_Os12g03554OsAffx.19470.1.S1_at11/1112+1411001..1420875Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os12g03554OsAffx.7473.1.S1_at11/1112+1411001..1420875Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os12g03570NANA12+1426776..1431538retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g03580OsAffx.26199.2.S1_at11/1112+1432889..1435183hypothetical protein
LOC_Os12g03580Os.27362.1.S2_at1/1112+1432889..1435183hypothetical protein
LOC_Os12g03594Os.52665.1.S1_at11/1112+1436032..1444090F-box domain containing protein, expressed
LOC_Os12g03610OsAffx.7475.1.S1_at11/1112+1448383..1449226hypothetical protein
LOC_Os12g03619NANA12+1449724..1450048NA
LOC_Os12g03630Os.57387.1.S1_at11/1112+1451167..1455276expressed protein
LOC_Os12g03630OsAffx.24436.1.S1_at10/1112+1451167..1455276expressed protein
LOC_Os12g03640Os.17338.1.S1_at9/1112+1456297..1458940Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26199.2.S1_at--259--2971Chr12:1432928..1432952 (25 bp)
AATGGTTGCACGTGGGCTGACCTAG
LOC_Os12g03580
OsAffx.26199.2.S1_at--596--3931Chr12:1432975..1432999 (25 bp)
CGGCGAAGTTGTTGACGACGGCATC
LOC_Os12g03580
OsAffx.26199.2.S1_at--281--5791Chr12:1432988..1433012 (25 bp)
GACGACGGCATCACAGTTGTTGACG
LOC_Os12g03580
OsAffx.26199.2.S1_at--914--2131Chr12:1433000..1433024 (25 bp)
ACAGTTGTTGACGACGGCATCACAT
LOC_Os12g03580
OsAffx.26199.2.S1_at--810--1931Chr12:1433013..1433037 (25 bp)
ACGGCATCACATGCGACTTTCTGCT
LOC_Os12g03580
OsAffx.26199.2.S1_at--96--9491Chr12:1433080..1433104 (25 bp)
TCTGCTACACGAGCTGGAGTCCAGG
LOC_Os12g03580
OsAffx.26199.2.S1_at--962--6091Chr12:1433096..1433118 (23 bp)
GAGTCCAGGGCTGCCGTGGTATCTC
LOC_Os12g03580
OsAffx.26199.2.S1_at--367--7511Chr12:1433436..1433458 (23 bp)
GTGGTATCTCTTTGTCGTCTTCGTG
LOC_Os12g03580
OsAffx.26199.2.S1_at--178--7211Chr12:1433447..1433471 (25 bp)
GTCGTCTTCGTGCACTGGGATCCAA
LOC_Os12g03580
OsAffx.26199.2.S1_at--822--6292Chr12:1433479..1433503 (25 bp)
GATGATGATCCAGATGGCGTAGCAT
LOC_Os12g03580
OsAffx.26199.2.S1_at--651--8371Chr12:1433494..1433518 (25 bp)
GGCGTAGCATCAACATCTAGCTTGG
LOC_Os12g03580
Target Sequence 
AATGGTTGCACGTGGGCTGACCTAGCTTCCCCCATCTATGGCGGTGGCGGCGAAGTTGTTGACGACGGCATCACAGTTGT
TGACGACGGCATCACATGCGACTTTCTGCTCAAGCTGCTCCGGGCAGGGAGCATGGTGGGCGCCGACGCGGCTCTGCTAC
ACGAGCTGGAGTCCAGGGCTGCCGTGGTATCTCTTTGTCGTCTTCGTGCACTGGGATCCAAGAACAGGGATGATGATCCA
GATGGCGTAGCATCAACATCTAGCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26199.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis