Browse Element(s) Details


OsAffx.26202.1.S1_at

Description tigr:9632.m02671
TID=OsAffx.26202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2830011/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28280NANA4+16545005..16547418Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g28290OsAffx.26201.1.S1_at10/114+16548556..16553829transposon protein, putative, Mutator sub-class
LOC_Os04g28300OsAffx.26202.1.S1_x_at11/114+16566168..16569835Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28300OsAffx.26202.1.S1_at11/114+16566168..16569835Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28300Os.53129.1.S1_x_at5/114+16566168..16569835Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28310OsAffx.26203.1.S1_at11/114+16572904..16576139hypothetical protein
LOC_Os04g28320NANA4+16576802..16577005hypothetical protein
LOC_Os04g28330NANA4+16580069..16580278hypothetical protein
LOC_Os04g28350OsAffx.26201.1.S1_at9/114+16586818..16591388transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26202.1.S1_at--181--8211Chr04:16569469..16569493 (25 bp)
GGAATTGTTTGATGCAATCTCTACT
LOC_Os04g28300
OsAffx.26202.1.S1_at--370--10791Chr04:16569473..16569497 (25 bp)
TTGTTTGATGCAATCTCTACTTATG
LOC_Os04g28300
OsAffx.26202.1.S1_at--768--6851Chr04:16569475..16569499 (25 bp)
GTTTGATGCAATCTCTACTTATGGG
LOC_Os04g28300
OsAffx.26202.1.S1_at--900--10771Chr04:16569477..16569501 (25 bp)
TTGATGCAATCTCTACTTATGGGTT
LOC_Os04g28300
OsAffx.26202.1.S1_at--275--6331Chr04:16569479..16569503 (25 bp)
GATGCAATCTCTACTTATGGGTTGG
LOC_Os04g28300
OsAffx.26202.1.S1_at--1118--651Chr04:16569480..16569504 (25 bp)
ATGCAATCTCTACTTATGGGTTGGT
LOC_Os04g28300
OsAffx.26202.1.S1_at--397--10271Chr04:16569493..16569517 (25 bp)
TTATGGGTTGGTGCCAAATATACAA
LOC_Os04g28300
OsAffx.26202.1.S1_at--413--7791Chr04:16569502..16569526 (25 bp)
GGTGCCAAATATACAAACCTACAGC
LOC_Os04g28300
OsAffx.26202.1.S1_at--465--2251Chr04:16569508..16569532 (25 bp)
AAATATACAAACCTACAGCATGATG
LOC_Os04g28300
OsAffx.26202.1.S1_at--335--9851Chr04:16569513..16569537 (25 bp)
TACAAACCTACAGCATGATGATAAC
LOC_Os04g28300
OsAffx.26202.1.S1_at--311--1751Chr04:16569518..16569542 (25 bp)
ACCTACAGCATGATGATAACAAATC
LOC_Os04g28300
Target Sequence 
GGAATTGTTTGATGCAATCTCTACTTATGGGTTGGTGCCAAATATACAAACCTACAGCATGATGATAACAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis