Browse Element(s) Details


OsAffx.26206.1.S1_at

Description tigr:9632.m02677
TID=OsAffx.26206.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2837010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28350OsAffx.26201.1.S1_at9/114+16586818..16591388transposon protein, putative, Mutator sub-class
LOC_Os04g28360NANA4+16598611..16598814hypothetical protein
LOC_Os04g28370OsAffx.26206.1.S1_at10/114+16607668..16607981hypothetical protein
LOC_Os04g28380NANA4+16612639..16612922NA
LOC_Os04g28390NANA4+16614697..16614897hypothetical protein
LOC_Os04g28399NANA4+16615372..16616803NA
LOC_Os04g28410Os.54330.1.S1_at11/114+16619997..16620867expressed protein
LOC_Os04g28420Os.25639.1.S1_at11/114+16626460..1663058570 kDa peptidylprolyl isomerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26206.1.S1_at--659--10851Chr04:16607927..16607951 (25 bp)
TTGGTGCAGGTCATGAGCGTCATCG
LOC_Os04g28370
OsAffx.26206.1.S1_at--556--7771Chr04:16607925..16607949 (25 bp)
GGTGCAGGTCATGAGCGTCATCGGC
LOC_Os04g28370
OsAffx.26206.1.S1_at--1111--4151Chr04:16607710..16607877 (25 bp)
CGCCGTGATCGGCATGCTAGCTAGC
LOC_Os04g28370
OsAffx.26206.1.S1_at--663--4471Chr04:16607709..16607876 (25 bp)
GCCGTGATCGGCATGCTAGCTAGCC
LOC_Os04g28370
OsAffx.26206.1.S1_at--710--3991NONE
CGTGATCGGCATGCTAGCTAGCCTA
NONE
OsAffx.26206.1.S1_at--534--7391Chr04:16607706..16607873 (25 bp)
GTGATCGGCATGCTAGCTAGCCTAA
LOC_Os04g28370
OsAffx.26206.1.S1_at--291--8851Chr04:16607705..16607872 (25 bp)
TGATCGGCATGCTAGCTAGCCTAAG
LOC_Os04g28370
OsAffx.26206.1.S1_at--58--6411Chr04:16607704..16607871 (25 bp)
GATCGGCATGCTAGCTAGCCTAAGC
LOC_Os04g28370
OsAffx.26206.1.S1_at--731--491Chr04:16607703..16607870 (25 bp)
ATCGGCATGCTAGCTAGCCTAAGCA
LOC_Os04g28370
OsAffx.26206.1.S1_at--144--3951Chr04:16607701..16607868 (25 bp)
CGGCATGCTAGCTAGCCTAAGCATT
LOC_Os04g28370
OsAffx.26206.1.S1_at--531--4991Chr04:16607699..16607719 (21 bp)
GCATGCTAGCTAGCCTAAGCATTGG
LOC_Os04g28370
Target Sequence 
TTGGTGCAGGTCATGAGCGTCATCGGCGGCGGCGCGGCGGCGGCGAGGCCGCTGCTGCTGCAGGCAGACGGCGGCGCCGT
GATCGGCATGCTAGCTAGCCTAAGCATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis