Browse Element(s) Details


Os.54330.1.S1_at

Description gb:AK103395.1
DB_XREF= gi:32988604
TID=Os.54330.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127M23, full insert sequence.
FL= gb:AK103395.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2841011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28360NANA4+16598611..16598814hypothetical protein
LOC_Os04g28370OsAffx.26206.1.S1_at10/114+16607668..16607981hypothetical protein
LOC_Os04g28380NANA4+16612639..16612922NA
LOC_Os04g28390NANA4+16614697..16614897hypothetical protein
LOC_Os04g28399NANA4+16615372..16616803NA
LOC_Os04g28410Os.54330.1.S1_at11/114+16619997..16620867expressed protein
LOC_Os04g28420Os.25639.1.S1_at11/114+16626460..1663058570 kDa peptidylprolyl isomerase, putative, expressed
LOC_Os04g28430NANA4+16641025..16641630retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g28440OsAffx.26208.1.S1_at11/114+16644339..16646796hypothetical protein
LOC_Os04g28440OsAffx.22850.1.S1_x_at1/114+16644339..16646796hypothetical protein
LOC_Os04g28440OsAffx.11259.1.S1_at1/114+16644339..16646796hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54330.1.S1_at--1155--8211Chr04:16620345..16620369 (25 bp)
GGCAACGGAATCACCTCGTCGGCTG
LOC_Os04g28410
Os.54330.1.S1_at--641--4691Chr04:16620429..16620453 (25 bp)
GCGGCGGCTACAGCACTTGTACGGC
LOC_Os04g28410
Os.54330.1.S1_at--932--10772Chr04:16620445..16620469 (25 bp)
TTGTACGGCCCGGTCGATGTCGTCG
LOC_Os04g28410
Os.54330.1.S1_at--1049--4472Chr04:16620485..16620509 (25 bp)
GCCGGCGAACACAGCGTCGTCGACG
LOC_Os04g28410
Os.54330.1.S1_at--421--3851Chr04:16620611..16620635 (25 bp)
CTGCAGCCAAGCTGTGCTTTCTCGG
LOC_Os04g28410
Os.54330.1.S1_at--356--2071Chr04:16620642..16620666 (25 bp)
ACTTGCAGCAATGGTCGTCGACGGC
LOC_Os04g28410
Os.54330.1.S1_at--895--4671Chr04:16620668..16620692 (25 bp)
GCGGTTCGAGGCACGAGCATATACT
LOC_Os04g28410
Os.54330.1.S1_at--220--1871Chr04:16620680..16620704 (25 bp)
ACGAGCATATACTGCAGGCCGCCGG
LOC_Os04g28410
Os.54330.1.S1_at--158--5191Chr04:16620715..16620739 (25 bp)
GCAATGCTACATCGCAACTGACTAG
LOC_Os04g28410
Os.54330.1.S1_at--335--5211Chr04:16620807..16620831 (25 bp)
GAATTTTCAGTTGTTAGCTCTCTAG
LOC_Os04g28410
Os.54330.1.S1_at--499--10011Chr04:16620821..16620845 (25 bp)
TAGCTCTCTAGCTGAATGCAAGCAG
LOC_Os04g28410
Target Sequence 
GGCAACGGAATCACCTCGTCGGCTGCCGCACCGGCCACGACGACGACGACGACGGCGACGACGACTCCGGTAGCAGCGGC
GTCGGCGGCGGCTACAGCACTTGTACGGCCCGGTCGATGTCGTCGAAGAGGAGGGCCATCGCCGGCGAACACAGCGTCGT
CGACGCGGCGGTTGTAGTCGTGCTGCGCCACCGCGAGCACAACTGCGGCGGCGGCGACGACGATCTCGACGACACGGCGA
GCTCGTCGTCCGCCGTGTCCTCCAGCCTGCAGCCAAGCTGTGCTTTCTCGGCGAGGCACTTGCAGCAATGGTCGTCGACG
GCGGCGGTTCGAGGCACGAGCATATACTGCAGGCCGCCGGCGCCGGCTACGCAATGCTACATCGCAACTGACTAGAAGAA
GCATAGACTAGCCTAGATGACAAGACTTTTTTTGTGTGTGTGTTTGTGTTTTTCTGTCTATAGAATTTTCAGTTGTTAGC
TCTCTAGCTGAATGCAAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis