Browse Element(s) Details


OsAffx.26208.1.S1_at

Description tigr:9632.m02684
TID=OsAffx.26208.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2844011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28410Os.54330.1.S1_at11/114+16619997..16620867expressed protein
LOC_Os04g28420Os.25639.1.S1_at11/114+16626460..1663058570 kDa peptidylprolyl isomerase, putative, expressed
LOC_Os04g28430NANA4+16641025..16641630retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g28440OsAffx.26208.1.S1_at11/114+16644339..16646796hypothetical protein
LOC_Os04g28440OsAffx.22850.1.S1_x_at1/114+16644339..16646796hypothetical protein
LOC_Os04g28440OsAffx.11259.1.S1_at1/114+16644339..16646796hypothetical protein
LOC_Os04g28450Os.27004.1.A1_at1/114+16647534..16648651hypothetical protein
LOC_Os04g28450OsAffx.11264.1.S1_s_at1/114+16647534..16648651hypothetical protein
LOC_Os04g28460Os.51607.1.A1_at11/114+16655894..16657487Phospholipid-transporting ATPase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26208.1.S1_at--368--10391Chr04:16644448..16644828 (25 bp)
TTTTCCCAGACCACTGGAGATATGT
LOC_Os04g28440
OsAffx.26208.1.S1_at--869--4171Chr04:16646041..16646065 (25 bp)
CCCAGTGGGAAACGGCAAGTGACAA
LOC_Os04g28440
OsAffx.26208.1.S1_at--853--5611Chr04:16646061..16646085 (25 bp)
GACAACAATGTCAGCAGAAAAGCCA
LOC_Os04g28440
OsAffx.26208.1.S1_at--227--10651Chr04:16646114..16646138 (25 bp)
TTCCTCCGAAAACGGAGCTGGCCTT
LOC_Os04g28440
OsAffx.26208.1.S1_at--421--3911Chr04:16646131..16646221 (25 bp)
CTGGCCTTCGGTGAGGCTAGTGTCA
LOC_Os04g28440
OsAffx.26208.1.S1_at--37--8891Chr04:16646210..16646232 (23 bp)
TGAGGCTAGTGTCAAGGACATCTGC
LOC_Os04g28440
OsAffx.26208.1.S1_at--882--2831Chr04:16646233..16646257 (25 bp)
AAGTACGGCGACATTTTCAAGAAGG
LOC_Os04g28440
OsAffx.26208.1.S1_at--287--5251Chr04:16646283..16646304 (22 bp)
GAATCCCAAGGAACTCGACAAGCCT
LOC_Os04g28440
OsAffx.26208.1.S1_at--641--2651Chr04:16646684..16646707 (24 bp)
AAGCCTTCCCTCTTTTACAGGTATG
LOC_Os04g28440
OsAffx.26208.1.S1_at--262--7931Chr04:16646714..16646738 (25 bp)
GGATTAGTGATTCTATTGGTGGTCA
LOC_Os04g28440
OsAffx.26208.1.S1_at--713--7091Chr04:16646735..16646759 (25 bp)
GTCACTTTGCAAAGGTTGCTGTTTC
LOC_Os04g28440
Target Sequence 
TTTTCCCAGACCACTGGAGATATGTTTGGGCAAAAATCTGCCGCAAAGACTTATGGATCAAATCAACTGGCACGCTCACG
AACCTAAAGGCAAGATTTTGGACCTGCATTGAAGTTAAGCAGATCTTCCAGGCCAGTGTGTGTTTTTCGCATCAACACGC
TTTTGGCATGCCCAGTGGGAAACGGCAAGTGACAACAATGTCAGCAGAAAAGCCATCTCCGTCGTCGGCAAGCAAGCCGC
CAATTCCTCCGAAAACGGAGCTGGCCTTCGGTGAGGCTAGTGTCAAGGACATCTGCAAGTACGGCGACATTTTCAAGAAG
GTGCTCGCCGAGGGACACAAGTGGGAGAATCCCAAGGAACTCGACAAGCCTTCCCTCTTTTACAGGTATGTATATTGGAT
TAGTGATTCTATTGGTGGTCACTTTGCAAAGGTTGCTGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis