Browse Element(s) Details


Os.51607.1.A1_at

Description gb:AK063167.1
DB_XREF= gi:32973185
TID=Os.51607.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-H07, full insert sequence.
FL= gb:AK063167.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2846011/11Phospholipid-transporting ATPase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28430NANA4+16641025..16641630retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g28440OsAffx.26208.1.S1_at11/114+16644339..16646796hypothetical protein
LOC_Os04g28440OsAffx.22850.1.S1_x_at1/114+16644339..16646796hypothetical protein
LOC_Os04g28440OsAffx.11259.1.S1_at1/114+16644339..16646796hypothetical protein
LOC_Os04g28450Os.27004.1.A1_at1/114+16647534..16648651hypothetical protein
LOC_Os04g28450OsAffx.11264.1.S1_s_at1/114+16647534..16648651hypothetical protein
LOC_Os04g28460Os.51607.1.A1_at11/114+16655894..16657487Phospholipid-transporting ATPase 2, putative, expressed
LOC_Os04g28470NANA4+16672992..16675162retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g28480Os.40031.1.S1_a_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.3.S1_at11/114+16677398..16682701expressed protein
LOC_Os04g28480OsAffx.26210.1.S1_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.3.S1_x_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.2.S1_x_at10/114+16677398..16682701expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51607.1.A1_at--1030--4251Chr04:16656458..16656482 (25 bp)
CCGGTGCTGGCTTTGAGATACTTCA
LOC_Os04g28460
Os.51607.1.A1_at--562--8171Chr04:16656433..16656457 (25 bp)
GGAACATGTTTCGACCTAATGCCAT
LOC_Os04g28460
Os.51607.1.A1_at--1143--2951Chr04:16656380..16656404 (25 bp)
AATGGACATACCCATACCACCAGAA
LOC_Os04g28460
Os.51607.1.A1_at--561--9511Chr04:16656321..16656345 (25 bp)
TCTCACCCATTTACTAGCCGATTCG
LOC_Os04g28460
Os.51607.1.A1_at--603--471Chr04:16656246..16656270 (25 bp)
ATCTGACGGATGATCTGCTGCACCT
LOC_Os04g28460
Os.51607.1.A1_at--162--1731Chr04:16656225..16656249 (25 bp)
ACCTATCAGCATCAGACCTTGGCAG
LOC_Os04g28460
Os.51607.1.A1_at--29--1751Chr04:16656210..16656234 (25 bp)
ACCTTGGCAGCTTGCGTTAACTGTA
LOC_Os04g28460
Os.51607.1.A1_at--1003--251Chr04:16656170..16656194 (25 bp)
ATATGCTAGCATGCACACCCATAGT
LOC_Os04g28460
Os.51607.1.A1_at--120--2291Chr04:16656064..16656088 (25 bp)
AAATGCTGCAATGCCTGGAATTCAG
LOC_Os04g28460
Os.51607.1.A1_at--356--791Chr04:16656027..16656051 (25 bp)
ATGTGTTCCAAATTATCCCAGATGT
LOC_Os04g28460
Os.51607.1.A1_at--589--7831Chr04:16655929..16655953 (25 bp)
TGGTACTTCGTTCGTCCCAAAATAT
LOC_Os04g28460
Target Sequence 
CCGGTGCTGGCTTTGAGATACTTCAGGAACATGTTTCGACCTAATGCCATCAACATACTTCAGCAAATCGAGCAATCCAA
TGGACATACCCATACCACCAGAAATATGGNGTCACGGATCATATNTGNTGGCAGTTNTCTCACCCATTTACTAGCCGATT
CGNGTNGCAACAGGGGCGCNACCTATCAGCCTNTTCTTTCAGATTCTGTAGCATCTGACGGATGATCTGCTGCACCTATC
AGCATCAGACCTTGGCAGCTTGCGTTAACTGTATNTCTTACCAGTGCAATATGCTAGCATGCACACCCATAGTCTCTAAC
AGCAATAGGATTTACTGATCACACAAAATTCTGAGAGTCAAAGCACAGAAGAAAGTTTCGCAGGTTCATTGCAAAAATGC
TGCAATGCCTGGAATTCAGGAAAAAAAATACATGTGTTCCAAATTATCCCAGATGTATAGTTTTGCTGTTAAAACAGAAG
TATATATGGCTGTTTTGGTTTGATGGCAATTATTGCCCTACCAATTATTTGGTACTTCGTTCGTCCCAAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51607.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis