Browse Element(s) Details


Os.40031.2.S1_x_at

Description gb:AK065506.1
DB_XREF= gi:32975524
TID=Os.40031.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013033G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027B07, full insert sequence.
FL= gb:AK065506.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2848010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28460Os.51607.1.A1_at11/114+16655894..16657487Phospholipid-transporting ATPase 2, putative, expressed
LOC_Os04g28470NANA4+16672992..16675162retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g28480Os.40031.1.S1_a_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.3.S1_at11/114+16677398..16682701expressed protein
LOC_Os04g28480OsAffx.26210.1.S1_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.3.S1_x_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.2.S1_x_at10/114+16677398..16682701expressed protein
LOC_Os04g28490OsAffx.3931.1.S1_at11/114+16688479..16689379hypothetical protein
LOC_Os04g28500NANA4+16690233..16690616hypothetical protein
LOC_Os04g28520Os.8413.2.A1_a_at10/114+16695262..16702466fatty acyl coA reductase, putative
LOC_Os04g28520Os.8413.2.A1_x_at7/114+16695262..16702466fatty acyl coA reductase, putative
LOC_Os04g28520Os.8413.2.A1_at3/114+16695262..16702466fatty acyl coA reductase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40031.2.S1_x_at--500--2331Chr04:16682497..16682519 (23 bp)
AAAGATGCATCGTCTTCTCATACCA
LOC_Os04g28480
Os.40031.2.S1_x_at--412--2971NONE
AATGGTCATTCCCACGATTCGTATG
NONE
Os.40031.2.S1_x_at--95--9371Chr04:16682290..16682314 (25 bp)
TCGACTGTTCGATCATGACTGCTCA
LOC_Os04g28480
Os.40031.2.S1_x_at--968--3831Chr04:16682272..16682296 (25 bp)
CTGCTCATCAAACTGCTCGATTGTA
LOC_Os04g28480
Os.40031.2.S1_x_at--811--2991Chr04:16682247..16682271 (25 bp)
AATGTTCAATCTCGATGCTGGTCTC
LOC_Os04g28480
Os.40031.2.S1_x_at--1135--6331Chr04:16682139..16682160 (22 bp)
GATGCTCTGTTTTCTCACCATTAAA
LOC_Os04g28480
Os.40031.2.S1_x_at--602--7791Chr04:16682110..16682134 (25 bp)
GGTCCACCAAGTCACACATGTTGTT
LOC_Os04g28480
Os.40031.2.S1_x_at--421--5331Chr04:16681998..16682022 (25 bp)
GAAGTGTTATCTTGCCTTCCTACAA
LOC_Os04g28480
Os.40031.2.S1_x_at--812--3571Chr04:16681954..16681978 (25 bp)
CATAGTCTGCTAACTGCGGTGGATA
LOC_Os04g28480
Os.40031.2.S1_x_at--357--7811Chr04:16681831..16681855 (25 bp)
GGTCGTGGTCCATATACATTCAAGA
LOC_Os04g28480
Os.40031.2.S1_x_at--79--5211Chr04:16681785..16681809 (25 bp)
GTATTGGGTCGCTCCTACCAAAAAG
LOC_Os04g28480
Target Sequence 
AAAGATGCATCGTCTTCTCATACCACTATCCCTACAAATGGTCATTCCCACGATTCGTATGTGATGCTCAATCATGATGT
TATCTCGACTGTTCGATCATGACTGCTCATCAAACTGCTCGATTGTAAATGTTCAATCTCGATGCTGGTCTCGATGCTCT
GTTTTCTCACCATTAAACCTTGGTCCACCAAGTCACACATGTTGTTATTGTGGCGCATTATTTTGGTATGAGGAGCGCAT
CGACCGGCGGCGTCACACAACAAGACCGTTATACAACAAGTGCTGCAAAGGAGGAAGTGTTATCTTGCCTTCCTACAAGC
CACCTCCAGAGCCTTTGCATAGTCTGCTAACTGCGGTGGATAGAGCTAAATCAGCACATTTCTGTGAGAATATAAGGTAC
TACAACTCTATGTTTGCTTTTACATCAATGGGGGTGAATGTGATTGATTCTATCAATGATGGTCGTGGTCCATATACATT
CAAGAGAAGTGGCCAGCTCTGCCATCGTATTGGGTCGCTCCTACCAAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40031.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis