Browse Element(s) Details


OsAffx.3931.1.S1_at

Description tigr:9632.m02690
TID=OsAffx.3931.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2849011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28470NANA4+16672992..16675162retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g28480Os.40031.1.S1_a_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.3.S1_at11/114+16677398..16682701expressed protein
LOC_Os04g28480OsAffx.26210.1.S1_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.3.S1_x_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.2.S1_x_at10/114+16677398..16682701expressed protein
LOC_Os04g28490OsAffx.3931.1.S1_at11/114+16688479..16689379hypothetical protein
LOC_Os04g28500NANA4+16690233..16690616hypothetical protein
LOC_Os04g28520Os.8413.2.A1_a_at10/114+16695262..16702466fatty acyl coA reductase, putative
LOC_Os04g28520Os.8413.2.A1_x_at7/114+16695262..16702466fatty acyl coA reductase, putative
LOC_Os04g28520Os.8413.2.A1_at3/114+16695262..16702466fatty acyl coA reductase, putative
LOC_Os04g28530NANA4+16710335..16710568hypothetical protein
LOC_Os04g28540OsAffx.26212.1.S1_at11/114+16713090..16713362hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3931.1.S1_at--559--5791Chr04:16689290..16689311 (22 bp)
GACGAAGTGCGGGTTATCACTATCA
LOC_Os04g28490
OsAffx.3931.1.S1_at--851--5311Chr04:16689290..16689314 (25 bp)
GAAGTGCGGGTTATCACTATCAAGT
LOC_Os04g28490
OsAffx.3931.1.S1_at--227--7291Chr04:16689293..16689317 (25 bp)
GTGCGGGTTATCACTATCAAGTCTG
LOC_Os04g28490
OsAffx.3931.1.S1_at--389--4671Chr04:16689295..16689319 (25 bp)
GCGGGTTATCACTATCAAGTCTGAA
LOC_Os04g28490
OsAffx.3931.1.S1_at--128--7691Chr04:16689297..16689321 (25 bp)
GGGTTATCACTATCAAGTCTGAAGT
LOC_Os04g28490
OsAffx.3931.1.S1_at--121--391Chr04:16689302..16689326 (25 bp)
ATCACTATCAAGTCTGAAGTTGTGC
LOC_Os04g28490
OsAffx.3931.1.S1_at--747--2031Chr04:16689305..16689329 (25 bp)
ACTATCAAGTCTGAAGTTGTGCGGA
LOC_Os04g28490
OsAffx.3931.1.S1_at--648--371Chr04:16689308..16689332 (25 bp)
ATCAAGTCTGAAGTTGTGCGGAGTA
LOC_Os04g28490
OsAffx.3931.1.S1_at--293--2811Chr04:16689311..16689335 (25 bp)
AAGTCTGAAGTTGTGCGGAGTAAAT
LOC_Os04g28490
OsAffx.3931.1.S1_at--335--5331Chr04:16689317..16689341 (25 bp)
GAAGTTGTGCGGAGTAAATGCGACA
LOC_Os04g28490
OsAffx.3931.1.S1_at--338--7291Chr04:16689323..16689347 (25 bp)
GTGCGGAGTAAATGCGACAAGTATA
LOC_Os04g28490
Target Sequence 
GACGAAGTGCGGGTTATCACTATCAAGTCTGAAGTTGTGCGGAGTAAATGCGACAAGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis