Browse Element(s) Details


Os.8413.2.A1_a_at

Description gb:CB641510
DB_XREF= gi:29636501
DB_XREF=OSJNEb01D03.r
CLONE=OSJNEb01D03
TID=Os.8413.2
CNT=8
FEA=EST
TIER=Stack
STK=7
UG=Os.8413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044F22, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2862011/11NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g2852010/11fatty acyl coA reductase, putative
LOC_Os04g286901/11Male sterility protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28580Os.45774.1.S1_at11/114+16732222..16736189transposon protein, putative, unclassified, expressed
LOC_Os04g28590OsAffx.31018.2.S1_x_at11/114+16736900..16741362hypothetical protein
LOC_Os04g28590OsAffx.31018.3.S1_x_at7/114+16736900..16741362hypothetical protein
LOC_Os04g28590Os.50578.1.S1_x_at7/114+16736900..16741362hypothetical protein
LOC_Os04g28600NANA4+16744143..16745856Male sterility protein 2, putative
LOC_Os04g28620Os.8413.2.A1_a_at11/114+16757818..16764193NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g28620Os.8413.1.S1_at10/114+16757818..16764193NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g28620Os.8413.2.A1_x_at3/114+16757818..16764193NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g28630OsAffx.14019.1.S1_at8/114+16766186..16769393hypothetical protein
LOC_Os04g28630OsAffx.20579.2.S1_at1/114+16766186..16769393hypothetical protein
LOC_Os04g28630OsAffx.20579.1.S1_at1/114+16766186..16769393hypothetical protein
LOC_Os04g28630OsAffx.29203.3.A1_x_at1/114+16766186..16769393hypothetical protein
LOC_Os04g28640NANA4+16773186..16774133hypothetical protein
LOC_Os04g28650Os.46306.1.S1_x_at6/114+16782915..16790205transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g28650Os.45976.1.S1_x_at2/114+16782915..16790205transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009556biological_processmicrosporogenesis
GO:0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8413.2.A1_a_at--690--3392Chr04:16763240..16763264 (25 bp)
CAGCAAATGTACTGTTGGGAGGGAT
LOC_Os04g28620
Os.8413.2.A1_a_at--53--1492Chr04:16763241..16763265 (25 bp)
AGCAAATGTACTGTTGGGAGGGATA
LOC_Os04g28620
Os.8413.2.A1_a_at--664--9892Chr04:16763831..16763855 (25 bp)
TACCTCGTGAACACCCACATTCCAG
LOC_Os04g28620
Os.8413.2.A1_a_at--770--1792Chr04:16763843..16763867 (25 bp)
ACCCACATTCCAGCTGCTATAAAGT
LOC_Os04g28620
Os.8413.2.A1_a_at--885--4172Chr04:16763844..16763868 (25 bp)
CCCACATTCCAGCTGCTATAAAGTA
LOC_Os04g28620
Os.8413.2.A1_a_at--539--4372Chr04:16763845..16763869 (25 bp)
CCACATTCCAGCTGCTATAAAGTAT
LOC_Os04g28620
Os.8413.2.A1_a_at--607--2072Chr04:16763847..16763871 (25 bp)
ACATTCCAGCTGCTATAAAGTATGC
LOC_Os04g28620
Os.8413.2.A1_a_at--359--92Chr04:16763849..16763873 (25 bp)
ATTCCAGCTGCTATAAAGTATGCCA
LOC_Os04g28620
Os.8413.2.A1_a_at--286--10693Chr04:16763850..16763874 (25 bp)
TTCCAGCTGCTATAAAGTATGCCAA
LOC_Os04g28620
Os.8413.2.A1_a_at--833--9212Chr04:16763851..16763875 (25 bp)
TCCAGCTGCTATAAAGTATGCCAAT
LOC_Os04g28620
Os.8413.2.A1_a_at--327--7032Chr04:16763926..16763950 (25 bp)
GTACATGCAAGGTGTTAGTTTGCAT
LOC_Os04g28620
Target Sequence 
CAGCAAATGTACTGTTGGGAGGGATATACNCCAAGAACTACTATGAGCTTAACCGAGGCTACAACATTTTAATGACTGTG
GCAAAGCTGTATGCCCCATATGTATTCTTCAAAGGATGGTTTGATGACACCANCCTGAGGAAACTGTGGAAGGCGACGGC
TATGGACCAAAATGATGATGCATCCATATTTAATTTTGATCCTAAGTGCATTAACTGGAGCTCATACCTCGTGAACACCC
ACATTCCAGCTGCTATAAAGTATGCCAATAACCAGAAGACGAAAGCACGCAGTGCATAAAAACATATTTAGATGATGATG
TACATGCAAGGTGTTAGTTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8413.2.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis