Browse Element(s) Details


OsAffx.20579.2.S1_at

Description tigr:9638.m01326
TID=OsAffx.20579.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g286301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28590OsAffx.31018.2.S1_x_at11/114+16736900..16741362hypothetical protein
LOC_Os04g28590OsAffx.31018.3.S1_x_at7/114+16736900..16741362hypothetical protein
LOC_Os04g28590Os.50578.1.S1_x_at7/114+16736900..16741362hypothetical protein
LOC_Os04g28600NANA4+16744143..16745856Male sterility protein 2, putative
LOC_Os04g28620Os.8413.2.A1_a_at11/114+16757818..16764193NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g28620Os.8413.1.S1_at10/114+16757818..16764193NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g28620Os.8413.2.A1_x_at3/114+16757818..16764193NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g28630OsAffx.14019.1.S1_at8/114+16766186..16769393hypothetical protein
LOC_Os04g28630OsAffx.20579.2.S1_at1/114+16766186..16769393hypothetical protein
LOC_Os04g28630OsAffx.20579.1.S1_at1/114+16766186..16769393hypothetical protein
LOC_Os04g28630OsAffx.29203.3.A1_x_at1/114+16766186..16769393hypothetical protein
LOC_Os04g28640NANA4+16773186..16774133hypothetical protein
LOC_Os04g28650Os.46306.1.S1_x_at6/114+16782915..16790205transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g28650Os.45976.1.S1_x_at2/114+16782915..16790205transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g28660NANA4+16792463..16793036retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20579.2.S1_at--138--9611Chr10:7816516..7816540 (25 bp)
TCATAGGGCGAGTCACCAGAAGCGA
NONE
OsAffx.20579.2.S1_at--850--6091Chr10:7816525..7816549 (25 bp)
GAGTCACCAGAAGCGAAGCGATCTT
NONE
OsAffx.20579.2.S1_at--413--1451Chr10:7816533..7816557 (25 bp)
AGAAGCGAAGCGATCTTCCAGGCCG
NONE
OsAffx.20579.2.S1_at--865--4591Chr10:7816537..7816561 (25 bp)
GCGAAGCGATCTTCCAGGCCGGAAA
NONE
OsAffx.20579.2.S1_at--273--5551Chr10:7816558..7816581 (24 bp)
GAAAGGAGGCCTTTTTCTGACGCGA
NONE
OsAffx.20579.2.S1_at--91--6231NONE
GAGGCCTTTTTCTGACGCGAGAATC
NONE
OsAffx.20579.2.S1_at--970--10591NONE
TTCTGACGCGAGAATCGGATTTTCT
NONE
OsAffx.20579.2.S1_at--516--4151Chr10:7817077..7817098 (22 bp)
CGCGAGAATCGGATTTTCTTTTCTT
NONE
OsAffx.20579.2.S1_at--1125--9331Chr10:7817102..7817126 (25 bp)
TCGCTCTGCACAGGAACCTGCTGGA
NONE
OsAffx.20579.2.S1_at--72--4092Chr10:7817315..7817339 (25 bp)
CGACGGCCTGGTGAGGTTCACTGAA
NONE
OsAffx.20579.2.S1_at--840--4171Chr10:7817351..7817375 (25 bp)
CCCAGGGAAGCGACGGCCGAAGCTA
NONE
Target Sequence 
TCATAGGGCGAGTCACCAGAAGCGAAGCGATCTTCCAGGCCGGAAAGGAGGCCTTTTTCTGACGCGAGAATCGGATTTTC
TTTTCTTCTCTCGCTCTGCACAGGAACCTGCTGGAATCCCACGACGCCAGCGGTGGAGGCTGGTTTTGGATGGGGAGGCA
CCGATTTTGCGATCTAGGGGTCGAGGCGATTCTGTTTTTGTGGTCGGAGGCGAGAGAAGCCCCGGTGGCGTGGCTGCGGC
GGGTAGAAACAGGAGGCGGAGGCGGCCATGGTGGCGGCGACTTCGGCAAACTCCGGGGAAGGGCGACGGCCTGGTGAGGT
TCACTGAAGCGAGAGGAGTCCCAGGGAAGCGACGGCCGAAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20579.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis