Browse Element(s) Details


Os.8413.2.A1_x_at

Description gb:CB641510
DB_XREF= gi:29636501
DB_XREF=OSJNEb01D03.r
CLONE=OSJNEb01D03
TID=Os.8413.2
CNT=8
FEA=EST
TIER=Stack
STK=7
UG=Os.8413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044F22, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g285207/11fatty acyl coA reductase, putative
LOC_Os04g286203/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28470NANA4+16672992..16675162retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g28480Os.40031.1.S1_a_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.3.S1_at11/114+16677398..16682701expressed protein
LOC_Os04g28480OsAffx.26210.1.S1_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.3.S1_x_at11/114+16677398..16682701expressed protein
LOC_Os04g28480Os.40031.2.S1_x_at10/114+16677398..16682701expressed protein
LOC_Os04g28490OsAffx.3931.1.S1_at11/114+16688479..16689379hypothetical protein
LOC_Os04g28500NANA4+16690233..16690616hypothetical protein
LOC_Os04g28520Os.8413.2.A1_a_at10/114+16695262..16702466fatty acyl coA reductase, putative
LOC_Os04g28520Os.8413.2.A1_x_at7/114+16695262..16702466fatty acyl coA reductase, putative
LOC_Os04g28520Os.8413.2.A1_at3/114+16695262..16702466fatty acyl coA reductase, putative
LOC_Os04g28530NANA4+16710335..16710568hypothetical protein
LOC_Os04g28540OsAffx.26212.1.S1_at11/114+16713090..16713362hypothetical protein
LOC_Os04g28550OsAffx.31777.2.S1_x_at1/114+16716060..16718649Transposable element protein, putative, Transposase_28
LOC_Os04g28560Os.1709.1.S1_x_at4/114+16720471..16726141retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009556biological_processmicrosporogenesis
GO:0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8413.2.A1_x_at--843--4031Chr04:16701639..16701663 (25 bp)
CGTTCAATAGGTTAGTATACTTCCA
LOC_Os04g28520
Os.8413.2.A1_x_at--1083--271Chr04:16701645..16701669 (25 bp)
ATAGGTTAGTATACTTCCAGGCATA
LOC_Os04g28520
Os.8413.2.A1_x_at--689--3392Chr04:16763240..16763264 (25 bp)
CAGCAAATGTACTGTTGGGAGGGAT
LOC_Os04g28620
Os.8413.2.A1_x_at--795--5471Chr04:16701858..16701882 (25 bp)
GAACTACTATGAGCTTAACCGAGGC
LOC_Os04g28520
Os.8413.2.A1_x_at--771--1792Chr04:16763843..16763867 (25 bp)
ACCCACATTCCAGCTGCTATAAAGT
LOC_Os04g28620
Os.8413.2.A1_x_at--834--9212Chr04:16763851..16763875 (25 bp)
TCCAGCTGCTATAAAGTATGCCAAT
LOC_Os04g28620
Os.8413.2.A1_x_at--795--2831Chr04:16702425..16702449 (25 bp)
AAGTATGCCAATAACCAGAAGACGA
LOC_Os04g28520
Os.8413.2.A1_x_at--460--1491Chr04:16702451..16702475 (25 bp)
AGCACGCAGTGCATAAAAACATATT
NONE
Os.8413.2.A1_x_at--774--9731Chr04:16702554..16702578 (25 bp)
TAAGTGATCTATGTCGGGTGGGAAC
NONE
Os.8413.2.A1_x_at--1144--5991Chr04:16702595..16702619 (25 bp)
GAGAGCGCTTACTATCACTGTTGCC
NONE
Os.8413.2.A1_x_at--1102--3652Chr04:16702602..16702626 (25 bp)
CTTACTATCACTGTTGCCATTGCTA
NONE
Target Sequence 
CGTTCAATAGGTTAGTATACTTCCAGGCATACATGATTNTACGGTACAAGGTACCATTGGAGATGATGCGTGCAGCAAAT
GTACTGTTGGGAGGGATATACNCCAAGAACTACTATGAGCTTAACCGAGGCTACAACATTTTAATGACTGTGGCAAAGCT
GTATGCCCCATATGTATTCTTCAAAGGATGGTTTGATGACACCANCCTGAGGAAACTGTGGAAGGCGACGGCTATGGACC
AAAATGATGATGCATCCATATTTAATTTTGATCCTAAGTGCATTAACTGGAGCTCATACCTCGTGAACACCCACATTCCA
GCTGCTATAAAGTATGCCAATAACCAGAAGACGAAAGCACGCAGTGCATAAAAACATATTTAGATGATGATGTACATGCA
AGGTGTTAGTTTGCATGCTGAAAATATTGCTATTATTATATGAAAAAATAGTGTGGAATAAGTGATCTATGTCGGGTGGG
AACTCTCATNTATGGCAGTGAGAGCGCTTACTATCACTGTTGCCATTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8413.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis