Browse Element(s) Details


Os.8413.1.S1_at

Description gb:AK065894.1
DB_XREF= gi:32975912
TID=Os.8413.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044F22, full insert sequence.
FL= gb:AK065894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2862010/11NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g138501/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28580Os.45774.1.S1_at11/114+16732222..16736189transposon protein, putative, unclassified, expressed
LOC_Os04g28590OsAffx.31018.2.S1_x_at11/114+16736900..16741362hypothetical protein
LOC_Os04g28590OsAffx.31018.3.S1_x_at7/114+16736900..16741362hypothetical protein
LOC_Os04g28590Os.50578.1.S1_x_at7/114+16736900..16741362hypothetical protein
LOC_Os04g28600NANA4+16744143..16745856Male sterility protein 2, putative
LOC_Os04g28620Os.8413.2.A1_a_at11/114+16757818..16764193NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g28620Os.8413.1.S1_at10/114+16757818..16764193NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g28620Os.8413.2.A1_x_at3/114+16757818..16764193NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g28630OsAffx.14019.1.S1_at8/114+16766186..16769393hypothetical protein
LOC_Os04g28630OsAffx.20579.2.S1_at1/114+16766186..16769393hypothetical protein
LOC_Os04g28630OsAffx.20579.1.S1_at1/114+16766186..16769393hypothetical protein
LOC_Os04g28630OsAffx.29203.3.A1_x_at1/114+16766186..16769393hypothetical protein
LOC_Os04g28640NANA4+16773186..16774133hypothetical protein
LOC_Os04g28650Os.46306.1.S1_x_at6/114+16782915..16790205transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g28650Os.45976.1.S1_x_at2/114+16782915..16790205transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8413.1.S1_at--1107--8231Chr04:16763319..16763343 (25 bp)
GGCAAAGCTGTTTGCCCCGTATGTC
LOC_Os04g28620
Os.8413.1.S1_at--164--6851Chr04:16763328..16763352 (25 bp)
GTTTGCCCCGTATGTCTTCTTCAAA
LOC_Os04g28620
Os.8413.1.S1_at--72--8911Chr04:16763875..16763899 (25 bp)
TGACCAGAAGGCGAAAGCACGTAGT
LOC_Os04g28620
Os.8413.1.S1_at--1015--6471Chr04:16764002..16764026 (25 bp)
GATAGCTCAATTATGCGGAATAAGT
LOC_Os04g28620
Os.8413.1.S1_at--207--2851Chr04:16764023..16764047 (25 bp)
AAGTCATCCGTGTCAGAGTTGTGTG
LOC_Os04g28620
Os.8413.1.S1_at--978--7474Chr04:16764053..16764077 (25 bp)
GTGTGTGTTGTAGGGCTCTAGCCCC
LOC_Os04g28620
Os.8413.1.S1_at--843--10152Chr04:16764094..16764118 (25 bp)
TATAATGAGGCGCAGTTCTCCTGTA
LOC_Os04g28620
Os.8413.1.S1_at--115--4591Chr04:16764103..16764127 (25 bp)
GCGCAGTTCTCCTGTATTTTTCGAG
LOC_Os04g28620
Os.8413.1.S1_at--231--7571Chr04:16764149..16764173 (25 bp)
GGGCGGGAACCCTCATCAATGGCAG
LOC_Os04g28620
Os.8413.1.S1_at--773--9571Chr04:16764161..16764185 (25 bp)
TCATCAATGGCAGTGAGACCGCTTA
LOC_Os04g28620
Os.8413.1.S1_at--154--5991Chr04:16764175..16764199 (25 bp)
GAGACCGCTTACTATGCACTGTTGC
NONE
Target Sequence 
GGCAAAGCTGTTTGCCCCGTATGTCTTCTTCAAAGGATGGTTTGATGACACCAACCTGAGGAAACTGTGGAAGGCGACGG
CTATGGACCAAAATGATGATGCATCCATATTTAATTTTGATCCTAAGTGCATTAACTGGAGCTCATACCTCGTGAACACC
CACATTCCAGCTGCTATAAAGTATGCCAATGACCAGAAGGCGAAAGCACGTAGTGCATAAAAATACATTTAGATGATGGT
GTACATGCAAGGTGTTAGTTTGCATGGTGAATATATTGCTATTATTATATGAAAAATATTATAATGCTAAGATTGTGATA
GCTCAATTATGCGGAATAAGTCATCCGTGTCAGAGTTGTGTGGAGTGGTGTGTGTTGTAGGGCTCTAGCCCCTTCTCTCT
CTTCTTAATATAATGAGGCGCAGTTCTCCTGTATTTTTCGAGAAAANAAAAGTCATCTGTGTCGGGCGGGAACCCTCATC
AATGGCAGTGAGACCGCTTACTATGCACTGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis