Browse Element(s) Details


OsAffx.26255.1.S1_at

Description tigr:9632.m02892
TID=OsAffx.26255.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3050011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30460OsAffx.14047.1.S1_at11/114+18010562..18012575hypothetical protein
LOC_Os04g30470OsAffx.26253.1.S1_at11/114+18013500..18016665U-box domain containing protein
LOC_Os04g30480NANA4+18017687..18017935hypothetical protein
LOC_Os04g30490OsAffx.26254.1.S1_at10/114+18025675..18029365MATE efflux family protein, expressed
LOC_Os04g30500OsAffx.26255.1.S1_at11/114+18031526..18032053hypothetical protein
LOC_Os04g30510OsAffx.14049.1.S1_at11/114+18042450..18043328hypothetical protein
LOC_Os04g30520OsAffx.3953.1.S1_at11/114+18050214..18050642hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26255.1.S1_at--783--1731Chr04:18031966..18031990 (25 bp)
ACCATCACCATCAGCGAGATTCTTG
LOC_Os04g30500
OsAffx.26255.1.S1_at--1144--6031Chr04:18031951..18031975 (25 bp)
GAGATTCTTGAGTCGCCAGCAATAG
LOC_Os04g30500
OsAffx.26255.1.S1_at--1084--1471Chr04:18031934..18031958 (25 bp)
AGCAATAGTTCGTCACCGGCATGTA
LOC_Os04g30500
OsAffx.26255.1.S1_at--1088--3931Chr04:18031918..18031942 (25 bp)
CGGCATGTAGCCCTGAAGGACGCTA
LOC_Os04g30500
OsAffx.26255.1.S1_at--130--971Chr04:18031902..18031926 (25 bp)
AGGACGCTACGGAACTCCATTTCAT
LOC_Os04g30500
OsAffx.26255.1.S1_at--356--731Chr04:18031872..18031896 (25 bp)
ATGATTCTGGTTTCACGGTTGTCGT
LOC_Os04g30500
OsAffx.26255.1.S1_at--919--8511Chr04:18031848..18031872 (25 bp)
TGGAAGATGCCCTGTCGTGGGCCAA
LOC_Os04g30500
OsAffx.26255.1.S1_at--970--8651Chr04:18031831..18031855 (25 bp)
TGGGCCAACTACCATGGTCTCCATG
LOC_Os04g30500
OsAffx.26255.1.S1_at--271--6951Chr04:18031672..18031696 (25 bp)
GTAGTTCGAACTCTTCATGTCAAGG
LOC_Os04g30500
OsAffx.26255.1.S1_at--702--951Chr04:18031650..18031674 (25 bp)
AGGACGGCAGACACGTGTGCCTTGA
LOC_Os04g30500
OsAffx.26255.1.S1_at--683--5931Chr04:18031559..18031583 (25 bp)
GAGCACCAATTCGATCTTGCACGGA
LOC_Os04g30500
Target Sequence 
ACCATCACCATCAGCGAGATTCTTGAGTCGCCAGCAATAGTTCGTCACCGGCATGTAGCCCTGAAGGACGCTACGGAACT
CCATTTCATGATAAATGATTCTGGTTTCACGGTTGTCGTGGAAGATGCCCTGTCGTGGGCCAACTACCATGGTCTCCATG
ATGACATCAAGGACGTCGGTGGCGATGGAGCAGTACATGGCGATGTGGACAGCGGAGTCCTTTTGCGCCCAGATCCCAGC
AGTGTCGAGCGGAGGAGGAGGCTCGAACGCGACGAAGATGGTTCTTTACTTGGTGTAGTTCGAACTCTTCATGTCAAGGA
CGGCAGACACGTGTGCCTTGAAGTTTGGGATGCTGAAAGCTCAGGTGCTGCACCAACGACCACGCGTGTTAGGCGTAGGT
GGCGGGAGAGCACCAATTCGATCTTGCACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis