Browse Element(s) Details


OsAffx.26286.1.S1_at

Description tigr:9632.m03093
TID=OsAffx.26286.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3244010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32380NANA4+19235840..19236400hypothetical protein
LOC_Os04g32390NANA4+19238249..19238782hypothetical protein
LOC_Os04g32404OsAffx.3978.1.S1_at11/114+19242651..19247947expressed protein
LOC_Os04g32404Os.51687.1.S1_at10/114+19242651..19247947expressed protein
LOC_Os04g32420OsAffx.26285.1.S1_at10/114+19253254..19254027hypothetical protein
LOC_Os04g32430OsAffx.14093.1.S1_at10/114+19255559..19257019expressed protein
LOC_Os04g32430OsAffx.10196.1.S1_x_at1/114+19255559..19257019expressed protein
LOC_Os04g32440OsAffx.26286.1.S1_at10/114+19261277..19264187hypothetical protein
LOC_Os04g32450OsAffx.14094.1.S1_at11/114+19266088..19267232hypothetical protein
LOC_Os04g32460Os.10149.2.S1_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os04g32460Os.10149.1.S1_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os04g32460Os.10149.1.S1_x_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26286.1.S1_at--384--7791Chr04:19263195..19263219 (25 bp)
GGTGCCGTACATGTATTGTGTTCAT
LOC_Os04g32440
OsAffx.26286.1.S1_at--1102--7991Chr04:19262940..19262964 (25 bp)
GGATGGCCTGTCAAACATTTTTACT
LOC_Os04g32440
OsAffx.26286.1.S1_at--167--6191Chr04:19262533..19262881 (25 bp)
GAGGACTTCTTCTACCGAATATTCC
LOC_Os04g32440
OsAffx.26286.1.S1_at--385--5231Chr04:19262517..19262541 (25 bp)
GAATATTCCTGCTATATGCGGATTG
LOC_Os04g32440
OsAffx.26286.1.S1_at--1151--2431Chr04:19262478..19262502 (25 bp)
AAAAGTGGTGGACCGCTCTGTCCCA
LOC_Os04g32440
OsAffx.26286.1.S1_at--875--2091Chr04:19262454..19262478 (25 bp)
ACATCCGGAGTAGCGCGTATCACGT
LOC_Os04g32440
OsAffx.26286.1.S1_at--746--7311NONE
GTGCTCTGCACGCAGGATCTCAAGT
NONE
OsAffx.26286.1.S1_at--853--9811Chr04:19261738..19261760 (23 bp)
TAACAAACCTCTTGTGCACTATGCC
LOC_Os04g32440
OsAffx.26286.1.S1_at--512--2711Chr04:19261483..19261507 (25 bp)
AAGCTTGCCGCTGCTATAGGAAAGG
LOC_Os04g32440
OsAffx.26286.1.S1_at--973--131Chr04:19261371..19261395 (25 bp)
ATTATGCTCATTCGGTGGCTAACCC
LOC_Os04g32440
OsAffx.26286.1.S1_at--229--1551Chr04:19261334..19261358 (25 bp)
AGCTTTTGATGGACTTCCGCTTGAA
LOC_Os04g32440
Target Sequence 
GGTGCCGTACATGTATTGTGTTCATTATGATGATGGAAGATTGGATGGCCTGTCAAACATTTTTACTTGGAAAGGGTTAT
GTGATTGCAAATAGCCAACTTCAAGGATTAAACATTTCCCAGAAAGAGGACTTCTTCTACCGAATATTCCTGCTATATGC
GGATTGGTTCCGCCTGTGGGAAAAGTGGTGGACCGCTCTGTCCCACATCCGGAGTAGCGCGTATCACGTGCTCTGCACGC
AGGATCTCAAGTCTGATGCTGAGTATTTAACAAACCTCTTGTGCACTATGCCAAAGAAGGCCAAAACAACTGAGAGTGAA
GATAATGTGTTGATTAGTGCATTCACTAGCGTTGGTGACAAGCTTGCCGCTGCTATAGGAAAGGCTTGTGAGCTAGACAA
TAAAATACCAGAAGGTTTATTTGACACCCTAAAAAGCCTTCCTAGATTAAATGAGATCCACATATCTTTCTATTATGCTC
ATTCGGTGGCTAACCCTCACATTGCTAGAGCTTTTGATGGACTTCCGCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis