Browse Element(s) Details


OsAffx.2630.1.S1_x_at

Description tigr:9630.m01478
TID=OsAffx.2630.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gene_id:K19E1.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1576010/11Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g334501/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15710OsAffx.2629.1.S1_at11/112+8854325..8854983Chemocyanin precursor, putative
LOC_Os02g15720OsAffx.4864.1.S1_at2/112+8856564..8862454hypothetical protein
LOC_Os02g15720OsAffx.18048.1.S1_at1/112+8856564..8862454hypothetical protein
LOC_Os02g15720OsAffx.30486.1.S1_at1/112+8856564..8862454hypothetical protein
LOC_Os02g15730OsAffx.24270.1.S1_x_at11/112+8867082..8867538Chemocyanin precursor, putative, expressed
LOC_Os02g15730OsAffx.24270.1.S1_at11/112+8867082..8867538Chemocyanin precursor, putative, expressed
LOC_Os02g15740Os.16163.1.S1_at8/112+8869106..8871518expressed protein
LOC_Os02g15750Os.16733.1.S1_at11/112+8873039..8876439expressed protein
LOC_Os02g15760OsAffx.2630.1.S1_at11/112+8879440..8882658Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g15760OsAffx.2630.1.S1_x_at10/112+8879440..8882658Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g15770NANA2+8894493..8895107hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2630.1.S1_x_at--264--3991Chr02:8881376..8881400 (25 bp)
CGGGCAGCCCGTACAACAAGCATGC
LOC_Os02g15760
OsAffx.2630.1.S1_x_at--43--1911Chr02:8881308..8881332 (25 bp)
ACGTCGTCGTGCTCGGTGGCGTACA
LOC_Os02g15760
OsAffx.2630.1.S1_x_at--78--4651Chr02:8881290..8881314 (25 bp)
GCGTACAGCATGTCGCCGGCCATGA
LOC_Os02g15760
OsAffx.2630.1.S1_x_at--163--10651Chr02:8881071..8881095 (25 bp)
TTCGCCGGGCCGAACCTGGTGCTGA
LOC_Os02g15760
OsAffx.2630.1.S1_x_at--365--1772Chr06:19491495..19491519 (25 bp)
ACCTGGTGCTGAAGACGGTGTCGCA
LOC_Os06g33450
OsAffx.2630.1.S1_x_at--693--4251Chr02:8881026..8881050 (25 bp)
CCGGGTCAGGCGCTCAAGATCATCG
LOC_Os02g15760
OsAffx.2630.1.S1_x_at--1106--411Chr02:8881008..8881032 (25 bp)
ATCATCGCCGCTCTGGAGAGCCTCT
LOC_Os02g15760
OsAffx.2630.1.S1_x_at--146--6011Chr02:8880993..8881017 (25 bp)
GAGAGCCTCTCGCTCGAGATCCTGC
LOC_Os02g15760
OsAffx.2630.1.S1_x_at--629--6031Chr02:8880978..8881002 (25 bp)
GAGATCCTGCACGTCAGCATCTGCA
LOC_Os02g15760
OsAffx.2630.1.S1_x_at--207--7091Chr02:8880966..8880990 (25 bp)
GTCAGCATCTGCACCGTCGACGACG
LOC_Os02g15760
OsAffx.2630.1.S1_x_at--686--9491NONE
TCTCCTTCACCATCAAGATTGGGAT
NONE
Target Sequence 
CGGGCAGCCCGTACAACAAGCATGCCGCCGCCGCCGCCACCGCTCGCCCGCCGCACCCGGCGGCCGCGACGTCGTCGTGC
TCGGTGGCGTACAGCATGTCGCCGGCCATGACGCCCACGTCGTCCTCGTCGACGACGACGACGACGACGCACGAGCTCTC
GCCGGCGCCGGCGTTCCTGCCCATCCTCGACAGCCTCGTCACCGAGCTCGCCGCCCGCGGCGGCGCCAGCTGCAGGCCGC
TGGTCATCCCCTCCTCCGCCGCCGCCATCGCCGGCATCGTCGGCGTCCCCGACGTGAGGGTGGAGTTCGCCGGGCCGAAC
CTGGTGCTGAAGACGGTGTCGCACCGCGCGCCGGGTCAGGCGCTCAAGATCATCGCCGCTCTGGAGAGCCTCTCGCTCGA
GATCCTGCACGTCAGCATCTGCACCGTCGACGACGCCACCGTCCTCTCCTTCACCATCAAGATTGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2630.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis