Browse Element(s) Details


OsAffx.26335.1.S1_at

Description tigr:9632.m03355
TID=OsAffx.26335.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3490011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34890NANA4+20997070..20998716hypothetical protein
LOC_Os04g34900OsAffx.26335.1.S1_at11/114+21019646..21020905hypothetical protein
LOC_Os04g34910Os.56368.1.S1_at11/114+21027564..21028605expressed protein
LOC_Os04g34920OsAffx.26336.1.S1_at11/114+21032968..21033396hypothetical protein
LOC_Os04g34930Os.20064.1.S1_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.1.S1_a_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.2.S1_at9/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34940Os.6078.1.S1_at11/114+21045201..21048079expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26335.1.S1_at--812--8931Chr04:21020239..21020329 (25 bp)
TGACCCCATGCAGATGAAGGACGTT
LOC_Os04g34900
OsAffx.26335.1.S1_at--391--8531Chr04:21020343..21020367 (25 bp)
TGGACATTGCGACCCACACTTGGAG
LOC_Os04g34900
OsAffx.26335.1.S1_at--1009--8951Chr04:21020446..21020470 (25 bp)
TGACAAGAACCACCTATCTGCTGCT
LOC_Os04g34900
OsAffx.26335.1.S1_at--291--3911Chr04:21020483..21020507 (25 bp)
CTGGACTCCAAACCACAGCTAGTTG
LOC_Os04g34900
OsAffx.26335.1.S1_at--1122--3591Chr04:21020511..21020535 (25 bp)
CTTGGAAGGAGTTTGACCCGCTGGA
LOC_Os04g34900
OsAffx.26335.1.S1_at--840--4131Chr04:21020529..21020553 (25 bp)
CGCTGGAGGACTGGGATCTACTGCA
LOC_Os04g34900
OsAffx.26335.1.S1_at--614--1551Chr04:21020562..21020586 (25 bp)
AGCTTGTCAACATAGGCTCGGGCAA
LOC_Os04g34900
OsAffx.26335.1.S1_at--1104--3131Chr04:21020620..21020644 (25 bp)
AATTAGCTACTACGGCGATGATTTC
LOC_Os04g34900
OsAffx.26335.1.S1_at--244--6531Chr04:21020639..21020663 (25 bp)
GATTTCATTGACCAGACATTTGCTA
LOC_Os04g34900
OsAffx.26335.1.S1_at--399--5671Chr04:21020653..21020677 (25 bp)
GACATTTGCTATCATAACCGGTGTG
LOC_Os04g34900
OsAffx.26335.1.S1_at--623--1051Chr04:21020679..21020703 (25 bp)
AGGTGGTGCCACGTACCTACCAGGG
LOC_Os04g34900
Target Sequence 
TGACCCCATGCAGATGAAGGACGTTGGCACCTACTGCATGGACATTGCGACCCACACTTGGAGCCCGGTTGGCAAGTGGA
TGCTACCCTTGTATGGCAAGATTGAGTATGTGCCGGAACTCAATCTCTGGTTTGGATTCTCTGACAAGAACCACCTATCT
GCTGCTGATCTCTCCAACCTGGACTCCAAACCACAGCTAGTTGGCACTTGGAAGGAGTTTGACCCGCTGGAGGACTGGGA
TCTACTGCAGGGGCCTCAGCTTGTCAACATAGGCTCGGGCAAGTTCTGCATTGCAAGGTTCTTCAATACTACGAGAATTA
GCTACTACGGCGATGATTTCATTGACCAGACATTTGCTATCATAACCGGTGTGGAGGTGGTGCCACGTACCTACCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis