Browse Element(s) Details


OsAffx.26352.1.S1_at

Description tigr:9632.m03472
TID=OsAffx.26352.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3601011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35970OsAffx.26350.1.S1_at11/114+21742721..21746176F-box domain containing protein
LOC_Os04g35980NANA4+21749621..21751791retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g35990OsAffx.14167.1.S1_at9/114+21754818..21759223F-box domain containing protein
LOC_Os04g35990OsAffx.26351.1.S1_at1/114+21754818..21759223F-box domain containing protein
LOC_Os04g36000OsAffx.26351.1.S1_at10/114+21761415..21764449F-box domain containing protein
LOC_Os04g36010OsAffx.26352.1.S1_at11/114+21769611..21773722hypothetical protein
LOC_Os04g36020OsAffx.14168.1.S1_at11/114+21777251..21778510F-box domain containing protein
LOC_Os04g36030OsAffx.14169.1.S1_at11/114+21778951..21782471AIG1 family protein
LOC_Os04g36030Os.52782.1.S1_at1/114+21778951..21782471AIG1 family protein
LOC_Os04g36040Os.49521.1.S1_at11/114+21783468..21788376POT family protein, expressed
LOC_Os04g36040Os.22928.1.S1_x_at1/114+21783468..21788376POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26352.1.S1_at--791--9051Chr04:21773287..21773311 (25 bp)
TGCAGGCATGGCGTTTCGTTCGATG
LOC_Os04g36010
OsAffx.26352.1.S1_at--708--9391Chr04:21773272..21773296 (25 bp)
TCGTTCGATGGCTCCACGGCGGATT
LOC_Os04g36010
OsAffx.26352.1.S1_at--29--4911Chr04:21773174..21773198 (25 bp)
GCTTCTCGCCGGCATGGTAAATGTG
LOC_Os04g36010
OsAffx.26352.1.S1_at--521--9811Chr04:21770854..21770878 (25 bp)
TAACTGTCAAATGTCGCCAAGCGGC
LOC_Os04g36010
OsAffx.26352.1.S1_at--541--631Chr04:21770823..21770847 (25 bp)
ATGCTTCTCGGTGCCCTGTTCAGTG
LOC_Os04g36010
OsAffx.26352.1.S1_at--675--8791Chr04:21770807..21770831 (25 bp)
TGTTCAGTGCCACCAATTTGGAGTT
LOC_Os04g36010
OsAffx.26352.1.S1_at--333--7691Chr04:21770666..21770803 (25 bp)
GGGTACTCGGGCAATGGCAATACTG
LOC_Os04g36010
OsAffx.26352.1.S1_at--26--5551Chr04:21770601..21770625 (25 bp)
GAAACTTGTCACTACACTGTTGTCT
LOC_Os04g36010
OsAffx.26352.1.S1_at--572--6111Chr04:21770558..21770582 (25 bp)
GAGTGACAGATTCAAGGCTCTTGGA
LOC_Os04g36010
OsAffx.26352.1.S1_at--991--5391Chr04:21770504..21770528 (25 bp)
GAAGCTTACTTTGCAGGATTTCTGG
LOC_Os04g36010
OsAffx.26352.1.S1_at--435--2251Chr04:21769654..21769678 (25 bp)
AAATTCAGGTGCTCGTGTTGCTTCT
LOC_Os04g36010
Target Sequence 
TGCAGGCATGGCGTTTCGTTCGATGGCTCCACGGCGGATTCGCTCGTGGAGGCGTCGATCAGGGTGGGGCGGCGGCGGCG
GCGGCGCGCGTTGCCGACGGGGGTTGAAGCCGTGCTTCTCGCCGGCATGGTAAATGTGACGACCTTGAGCTCGAAGGTAT
ACAGGCAAAGGGATGGTACTGTTTCATTGTATGGGGTGAATTCCCTTGTGGAGGCATCGATTGATGTAAGTAACTGTCAA
ATGTCGCCAAGCGGCGAGGCCATGCTTCTCGGTGCCCTGTTCAGTGCCACCAATTTGGAGTTGAAGGGTACTCGGGCAAT
GGCAATACTGGATGAGGAATTGGATAAATTCCCATTATTCAACAACCTGAGAAACTTGTCACTACACTGTTGTCTTCGAG
ACAAAGGTAATTTGAGTGACAGATTCAAGGCTCTTGGAAGATTACTACAAAAGTCTCTTAATTTGGAGAAGCTTACTTTG
CAGGATTTCTGGGCATCATGGTGCAGAAATACAAGTTCTGTTCTAGGAAAAATTCAGGTGCTCGTGTTGCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis