Browse Element(s) Details


OsAffx.26360.1.S1_at

Description tigr:9632.m03515
TID=OsAffx.26360.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3742011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36890Os.16231.1.S1_s_at11/114+22039220..22043505peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os04g36890Os.16231.1.S2_at11/114+22039220..22043505peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os04g36900Os.54731.1.S1_at10/114+22045539..22047542expressed protein
LOC_Os04g36900OsAffx.14173.1.S1_x_at8/114+22045539..22047542expressed protein
LOC_Os04g36910Os.19133.1.S1_at11/114+22048011..22053244expressed protein
LOC_Os04g37410OsAffx.14174.1.S1_at11/114+22065231..22066560hypothetical protein
LOC_Os04g37420OsAffx.26360.1.S1_at11/114+22068482..22068706hypothetical protein
LOC_Os04g37430OsAffx.26361.1.S1_x_at11/114+22085990..22090232Lipoxygenase 5, putative, expressed
LOC_Os04g37430OsAffx.26361.1.S1_at11/114+22085990..22090232Lipoxygenase 5, putative, expressed
LOC_Os04g37440OsAffx.14175.1.S1_at11/114+22093180..22093638hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26360.1.S1_at--399--3991Chr04:22068517..22068541 (25 bp)
CGTGACATACCGGTGCAGGGTAATC
LOC_Os04g37420
OsAffx.26360.1.S1_at--356--9791Chr04:22068524..22068548 (25 bp)
TACCGGTGCAGGGTAATCCGCACTT
LOC_Os04g37420
OsAffx.26360.1.S1_at--1042--7811Chr04:22068535..22068559 (25 bp)
GGTAATCCGCACTTTTGGGAAGAGA
LOC_Os04g37420
OsAffx.26360.1.S1_at--119--8271Chr04:22068567..22068591 (25 bp)
GGCAGGACAGGCATCTCCGTAGCAA
LOC_Os04g37420
OsAffx.26360.1.S1_at--96--911Chr04:22068575..22068599 (25 bp)
AGGCATCTCCGTAGCAAAAAAGTGA
LOC_Os04g37420
OsAffx.26360.1.S1_at--1093--2311Chr04:22068593..22068617 (25 bp)
AAAGTGAACCTAATCTGCAGCCCTG
LOC_Os04g37420
OsAffx.26360.1.S1_at--891--2631Chr04:22068599..22068623 (25 bp)
AACCTAATCTGCAGCCCTGAGATGA
LOC_Os04g37420
OsAffx.26360.1.S1_at--905--9031Chr04:22068608..22068632 (25 bp)
TGCAGCCCTGAGATGATCCCAGAAA
LOC_Os04g37420
OsAffx.26360.1.S1_at--145--6371Chr04:22068622..22068646 (25 bp)
GATCCCAGAAATGATGGAGTACTTG
LOC_Os04g37420
OsAffx.26360.1.S1_at--538--6091Chr04:22068638..22068662 (25 bp)
GAGTACTTGAAAATAGTCCTACCAC
LOC_Os04g37420
OsAffx.26360.1.S1_at--359--5512Chr04:22068646..22068670 (25 bp)
GAAAATAGTCCTACCACTGGTGGAG
LOC_Os04g37420
Target Sequence 
CGTGACATACCGGTGCAGGGTAATCCGCACTTTTGGGAAGAGAAAGCCAGGGCAGGACAGGCATCTCCGTAGCAAAAAAG
TGAACCTAATCTGCAGCCCTGAGATGATCCCAGAAATGATGGAGTACTTGAAAATAGTCCTACCACTGGTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis