Browse Element(s) Details


OsAffx.14175.1.S1_at

Description tigr:9632.m03517
TID=OsAffx.14175.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3744011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37420OsAffx.26360.1.S1_at11/114+22068482..22068706hypothetical protein
LOC_Os04g37430OsAffx.26361.1.S1_x_at11/114+22085990..22090232Lipoxygenase 5, putative, expressed
LOC_Os04g37430OsAffx.26361.1.S1_at11/114+22085990..22090232Lipoxygenase 5, putative, expressed
LOC_Os04g37440OsAffx.14175.1.S1_at11/114+22093180..22093638hypothetical protein
LOC_Os04g37450Os.57139.1.S1_at11/114+22094083..22094851expressed protein
LOC_Os04g37460Os.12927.1.S1_at11/114+22095005..22097350Glutamate decarboxylase, putative, expressed
LOC_Os04g37470Os.21320.1.S1_at10/114+22097743..22100498NADH dependent 6'-deoxychalcone synthase, putative, expressed
LOC_Os04g37480Os.8600.1.S1_at11/114+22102247..22104485NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os04g37490Os.11816.1.S1_at11/114+22104786..22107807NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os04g37500Os.1215.1.S1_at11/114+22111117..22113470Glutamate decarboxylase, putative, expressed
LOC_Os04g37510OsAffx.26362.1.S1_at11/114+22113602..22114033uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os04g37520OsAffx.4008.1.S1_at11/114+22115957..22118200expressed protein
LOC_Os04g37520Os.49478.1.S1_at1/114+22115957..22118200expressed protein
LOC_Os04g37530OsAffx.26363.1.S1_at11/114+22118427..22120817expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14175.1.S1_at--413--7911Chr04:22093562..22093586 (25 bp)
GGTTGCTGGAGACTAGACCCGCGAG
LOC_Os04g37440
OsAffx.14175.1.S1_at--384--4711Chr04:22093558..22093582 (25 bp)
GCTGGAGACTAGACCCGCGAGGGCC
LOC_Os04g37440
OsAffx.14175.1.S1_at--7--2611Chr04:22093500..22093524 (25 bp)
AACGCAGTGGCGTTCGAGGGCGCGG
LOC_Os04g37440
OsAffx.14175.1.S1_at--828--4571Chr04:22093481..22093505 (25 bp)
GCGCGGAGCGGTTTGAGCGCCACGA
LOC_Os04g37440
OsAffx.14175.1.S1_at--1000--7251Chr04:22093421..22093445 (25 bp)
GTGGCGGTTTGCAGTGGGGTTCGAA
LOC_Os04g37440
OsAffx.14175.1.S1_at--239--971Chr04:22093391..22093415 (25 bp)
AGGAGAAATGTTTATTGCCGTCGTC
LOC_Os04g37440
OsAffx.14175.1.S1_at--280--5971Chr04:22093389..22093413 (25 bp)
GAGAAATGTTTATTGCCGTCGTCCT
LOC_Os04g37440
OsAffx.14175.1.S1_at--776--1411Chr04:22093388..22093412 (25 bp)
AGAAATGTTTATTGCCGTCGTCCTC
LOC_Os04g37440
OsAffx.14175.1.S1_at--844--5571Chr04:22093387..22093411 (25 bp)
GAAATGTTTATTGCCGTCGTCCTCC
LOC_Os04g37440
OsAffx.14175.1.S1_at--74--751Chr04:22093384..22093408 (25 bp)
ATGTTTATTGCCGTCGTCCTCCTTG
LOC_Os04g37440
OsAffx.14175.1.S1_at--1145--4771Chr04:22093321..22093345 (25 bp)
GCTGCGCCCCGATGGGAGCTTGCCA
LOC_Os04g37440
Target Sequence 
GGTTGCTGGAGACTAGACCCGCGAGGGCCAAGGTGGAGGAGATGTTCGCGCGGGAGATCCGCAACGCAGTGGCGTTCGAG
GGCGCGGAGCGGTTTGAGCGCCACGAGAGCTTCGCCGGGCGGCGGCGGCGCATGGAGGACGGTGGCGGTTTGCAGTGGGG
TTCGAAGGCGGAGGAGAAATGTTTATTGCCGTCGTCCTCCTTGGCTCGTCGTCCCAGACGCCAACCGTCGCCCCCGGTTT
CGCTGCGCCCCGATGGGAGCTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis