Browse Element(s) Details


Os.11816.1.S1_at

Description gb:AK108048.1
DB_XREF= gi:32993257
TID=Os.11816.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11816 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-F08, full insert sequence.
FL= gb:AK108048.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3749011/11NADH-dependent oxidoreductase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37430OsAffx.26361.1.S1_x_at11/114+22085990..22090232Lipoxygenase 5, putative, expressed
LOC_Os04g37430OsAffx.26361.1.S1_at11/114+22085990..22090232Lipoxygenase 5, putative, expressed
LOC_Os04g37440OsAffx.14175.1.S1_at11/114+22093180..22093638hypothetical protein
LOC_Os04g37450Os.57139.1.S1_at11/114+22094083..22094851expressed protein
LOC_Os04g37460Os.12927.1.S1_at11/114+22095005..22097350Glutamate decarboxylase, putative, expressed
LOC_Os04g37470Os.21320.1.S1_at10/114+22097743..22100498NADH dependent 6'-deoxychalcone synthase, putative, expressed
LOC_Os04g37480Os.8600.1.S1_at11/114+22102247..22104485NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os04g37490Os.11816.1.S1_at11/114+22104786..22107807NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os04g37500Os.1215.1.S1_at11/114+22111117..22113470Glutamate decarboxylase, putative, expressed
LOC_Os04g37510OsAffx.26362.1.S1_at11/114+22113602..22114033uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os04g37520OsAffx.4008.1.S1_at11/114+22115957..22118200expressed protein
LOC_Os04g37520Os.49478.1.S1_at1/114+22115957..22118200expressed protein
LOC_Os04g37530OsAffx.26363.1.S1_at11/114+22118427..22120817expressed protein
LOC_Os04g37540Os.17444.1.S1_a_at11/114+22121721..22127414expressed protein
LOC_Os04g37550Os.18235.1.S1_at10/114+22128884..22130725Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g37560OsAffx.14176.1.S1_at11/114+22131351..22131599hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11816.1.S1_at--425--3731Chr04:22105743..22105767 (25 bp)
CTACTCGCCGTTGGGTGGGCAGAAC
LOC_Os04g37490
Os.11816.1.S1_at--1098--831Chr04:22105792..22105816 (25 bp)
ATGGAATCCCCGGTGCTCGCGGACA
LOC_Os04g37490
Os.11816.1.S1_at--204--2911Chr04:22107354..22107378 (25 bp)
AAGGAGTGACCCCAATCCCCAAGAG
LOC_Os04g37490
Os.11816.1.S1_at--666--8191Chr04:22107436..22107460 (25 bp)
GGAAGACCGTCTCAAGATCAGCCAG
LOC_Os04g37490
Os.11816.1.S1_at--225--5531Chr04:22107469..22107493 (25 bp)
GAAAAAGATCGTCACGGCTGCACGA
LOC_Os04g37490
Os.11816.1.S1_at--822--8331Chr04:22107484..22107508 (25 bp)
GGCTGCACGAATGTTCTCTCCGGAT
LOC_Os04g37490
Os.11816.1.S1_at--1091--10571Chr04:22107497..22107521 (25 bp)
TTCTCTCCGGATGGTGAGTTCGCGT
LOC_Os04g37490
Os.11816.1.S1_at--510--1231Chr04:22107513..22107537 (25 bp)
AGTTCGCGTCGGTTGATCTATCAGA
LOC_Os04g37490
Os.11816.1.S1_at--1014--1291Chr04:22107564..22107588 (25 bp)
AGATGAAGATGCCTGGCTGCCCCTG
LOC_Os04g37490
Os.11816.1.S1_at--877--851Chr04:22107661..22107685 (25 bp)
ATGGCTGCCTTTTTAATTCGCCTTC
LOC_Os04g37490
Os.11816.1.S1_at--925--3151Chr04:22107675..22107699 (25 bp)
AATTCGCCTTCGGATGATCGGTTAT
LOC_Os04g37490
Target Sequence 
CTACTCGCCGTTGGGTGGGCAGAACTGGATAGGCGAAGGCAACGACGTGATGGAATCCCCGGTGCTCGCGGACATCGCCA
GGGCCAGAGGCAAGAGCATCGCACAGGTGTCATTGAGATGGATTCATGAGCAAGGAGTGACCCCAATCCCCAAGAGCTAC
AACAAGGAGAGGCTGAAACAGAATCTTGAGATATTCGACTGGGAGCTGACCAAGGAAGACCGTCTCAAGATCAGCCAGAT
CCCGCAGAAAAAGATCGTCACGGCTGCACGAATGTTCTCTCCGGATGGTGAGTTCGCGTCGGTTGATCTATCAGACATGG
AAATTGTGGAGGAGTAGGTCCAGATGAAGATGCCTGGCTGCCCCTGCTGCAGTTTTTTTTTCACGTTTGTATTTATGAAA
AGATTCAATTAGGATTTGTATTTGAATACTAATTTTATATGGCTGCCTTTTTAATTCGCCTTCGGATGATCGGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis