Browse Element(s) Details


Os.12927.1.S1_at

Description gb:AK070858.1
DB_XREF= gi:32980881
TID=Os.12927.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023068K15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023068K15, full insert sequence.
FL= gb:AK070858.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3746011/11Glutamate decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37430OsAffx.26361.1.S1_x_at11/114+22085990..22090232Lipoxygenase 5, putative, expressed
LOC_Os04g37430OsAffx.26361.1.S1_at11/114+22085990..22090232Lipoxygenase 5, putative, expressed
LOC_Os04g37440OsAffx.14175.1.S1_at11/114+22093180..22093638hypothetical protein
LOC_Os04g37450Os.57139.1.S1_at11/114+22094083..22094851expressed protein
LOC_Os04g37460Os.12927.1.S1_at11/114+22095005..22097350Glutamate decarboxylase, putative, expressed
LOC_Os04g37470Os.21320.1.S1_at10/114+22097743..22100498NADH dependent 6'-deoxychalcone synthase, putative, expressed
LOC_Os04g37480Os.8600.1.S1_at11/114+22102247..22104485NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os04g37490Os.11816.1.S1_at11/114+22104786..22107807NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os04g37500Os.1215.1.S1_at11/114+22111117..22113470Glutamate decarboxylase, putative, expressed
LOC_Os04g37510OsAffx.26362.1.S1_at11/114+22113602..22114033uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os04g37520OsAffx.4008.1.S1_at11/114+22115957..22118200expressed protein
LOC_Os04g37520Os.49478.1.S1_at1/114+22115957..22118200expressed protein
LOC_Os04g37530OsAffx.26363.1.S1_at11/114+22118427..22120817expressed protein
LOC_Os04g37540Os.17444.1.S1_a_at11/114+22121721..22127414expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006536biological_processglutamate metabolism
GO:0006807biological_processnitrogen compound metabolism
GO:0004351molecular_functionglutamate decarboxylase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12927.1.S1_at--90--2751Chr04:22095351..22095375 (25 bp)
AAGAAGAGCAGCCTCGTCTGCTGAT
LOC_Os04g37460
Os.12927.1.S1_at--749--1991Chr04:22095313..22095337 (25 bp)
ACTCGCGCGTACATAAAGTGCAGGA
LOC_Os04g37460
Os.12927.1.S1_at--896--9571Chr04:22095279..22095303 (25 bp)
TCTTGACCCGTCTTGCATTGAGTTC
LOC_Os04g37460
Os.12927.1.S1_at--90--3611Chr04:22095264..22095288 (25 bp)
CATTGAGTTCTTCGTTTGCTGCTGC
LOC_Os04g37460
Os.12927.1.S1_at--564--10371Chr04:22095218..22095242 (25 bp)
TTTTCACCCGCTGAATTTTGAGTTC
LOC_Os04g37460
Os.12927.1.S1_at--567--6071Chr04:22095199..22095223 (25 bp)
GAGTTCAGTTTCAAATTCGCTTCGA
LOC_Os04g37460
Os.12927.1.S1_at--630--2171Chr04:22095158..22095182 (25 bp)
ACACCGATTTGTGGCATTCTTGCAG
LOC_Os04g37460
Os.12927.1.S1_at--430--10171Chr04:22095110..22095134 (25 bp)
TATAGGCATGTACACGCAGAGACGT
LOC_Os04g37460
Os.12927.1.S1_at--335--2851Chr04:22095071..22095095 (25 bp)
AAGTGAGATGCACCGATCTGTACCG
LOC_Os04g37460
Os.12927.1.S1_at--107--491Chr04:22095056..22095080 (25 bp)
ATCTGTACCGGCCATGGCATGGAAT
LOC_Os04g37460
Os.12927.1.S1_at--1106--8211Chr04:22095036..22095060 (25 bp)
GGAATTGGTTTGTCATGGGCTATAG
LOC_Os04g37460
Target Sequence 
AAGAAGAGCAGCCTCGTCTGCTGATCATCGACTCCTGCACTCGCGCGTACATAAAGTGCAGGAACGAATAATTCTTGACC
CGTCTTGCATTGAGTTCTTCGTTTGCTGCTGCTTCTTTTCTTTTTTTTTTNCCTTTTCACCCGCTGAATTTTGAGTTCAG
TTTCAAATTCGCTTCGATAGATTTGTGTATGTCACACCGATTTGTGGCATTCTTGCAGACAAGTTACCAATATGAAATGC
GTATAGGCATGTACACGCAGAGACGTGTCAGGCAGAACAGAAGTGAGATGCACCGATCTGTACCGGCCATGGCATGGAAT
TGGTTTGTCATGGGCTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis