Browse Element(s) Details


OsAffx.14173.1.S1_x_at

Description tigr:9632.m03512
TID=OsAffx.14173.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY143978 At4g25340T30C3_20
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g369008/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36840OsAffx.4007.1.S1_at11/114+22020147..22023130pentatricopeptide, putative, expressed
LOC_Os04g36850OsAffx.26358.1.S1_at10/114+22024778..22027275expressed protein
LOC_Os04g36859Os.8619.1.S1_at7/114+22027808..22029970signal peptidase complex 25 kDa subunit, putative, expressed
LOC_Os04g36859Os.52782.1.S1_at1/114+22027808..22029970signal peptidase complex 25 kDa subunit, putative, expressed
LOC_Os04g36868NANA4+22030156..22030559expressed protein
LOC_Os04g36880NANA4+22038055..22038429expressed protein
LOC_Os04g36890Os.16231.1.S1_s_at11/114+22039220..22043505peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os04g36890Os.16231.1.S2_at11/114+22039220..22043505peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os04g36900Os.54731.1.S1_at10/114+22045539..22047542expressed protein
LOC_Os04g36900OsAffx.14173.1.S1_x_at8/114+22045539..22047542expressed protein
LOC_Os04g36910Os.19133.1.S1_at11/114+22048011..22053244expressed protein
LOC_Os04g37410OsAffx.14174.1.S1_at11/114+22065231..22066560hypothetical protein
LOC_Os04g37420OsAffx.26360.1.S1_at11/114+22068482..22068706hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14173.1.S1_x_at--163--9131Chr04:22046340..22046364 (25 bp)
TGCGGCCAGTATGCTCAACGACACG
LOC_Os04g36900
OsAffx.14173.1.S1_x_at--1148--9711Chr04:22046411..22046435 (25 bp)
TCAAGATCCTCCTCAAGTCAGTGGA
LOC_Os04g36900
OsAffx.14173.1.S1_x_at--232--3031Chr04:22046529..22046553 (25 bp)
AATCCGCAGGCTATTCCAGGTCGAG
LOC_Os04g36900
OsAffx.14173.1.S1_x_at--690--6991Chr04:22046604..22046628 (25 bp)
GTACGAGGCCATACAAGCTGCCAGA
LOC_Os04g36900
OsAffx.14173.1.S1_x_at--974--1411Chr04:22046626..22046650 (25 bp)
AGAAATTTGCCTGAGCTGCCTGTAT
LOC_Os04g36900
OsAffx.14173.1.S1_x_at--562--6891Chr04:22046647..22046671 (25 bp)
GTATCCGCCGTATGTGCTATACTGG
LOC_Os04g36900
OsAffx.14173.1.S1_x_at--1111--9071Chr04:22046661..22046685 (25 bp)
TGCTATACTGGCTGCGGCTGAGAAA
LOC_Os04g36900
OsAffx.14173.1.S1_x_at--523--2651NONE
AAGCCTTCTGCCTATTTATCTGTTA
NONE
OsAffx.14173.1.S1_x_at--431--6791Chr04:22047415..22047439 (25 bp)
GTTATGTTGCTCTTCTCAACTTGGT
LOC_Os04g36900
OsAffx.14173.1.S1_x_at--895--2671Chr04:22047767..22047791 (25 bp)
AAGCATCGAGACATCCTAGTTTTTG
NONE
OsAffx.14173.1.S1_x_at--952--2071Chr04:22047777..22047801 (25 bp)
ACATCCTAGTTTTTGCAGGTGGGCA
NONE
Target Sequence 
TGCGGCCAGTATGCTCAACGACACGCCTGGTCTCTTGGCGCTCCTGGATGCACGCAGCCAGGAGCAACCTCTCAAGATCC
TCCTCAAGTCAGTGGAGGACGCCAAGGACTTCATCAGCAACTGGAAGATCAACAAGGACGTCGTCGAGGTGGACGTTTGT
CCAGCCCTGACCCTTGACGAGGTCGGCGCAATCCGCAGGCTATTCCAGGTCGAGAAAGCTGACAAGTTCTTGACAGGAGA
TGTCGTCAAGGTGAAGCTAGGGCAGTACGAGGCCATACAAGCTGCCAGAAATTTGCCTGAGCTGCCTGTATCCGCCGTAT
GTGCTATACTGGCTGCGGCTGAGAAAGGAAAAAACAAGGGCGCAGCTGATGTTGGCGCCCAAGGCCAACAGAAGCCTTCT
GCCTATTTATCTGTTATGTTGCTCTTCTCAACTTGGTATTCTAAAGTGAGCATAGGCATCAATAGAATCAGAGAGGATAA
AGCATCGAGACATCCTAGTTTTTGCAGGTGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14173.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis