Browse Element(s) Details


Os.16231.1.S1_s_at

Description gb:AK073743.1
DB_XREF= gi:32983766
TID=Os.16231.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033147C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067L09, full insert sequence.
FL= gb:AK103814.1 gb:AK073743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3689011/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36830OsAffx.26357.1.S1_at11/114+22017500..22019654expressed protein
LOC_Os04g36840OsAffx.4007.1.S1_at11/114+22020147..22023130pentatricopeptide, putative, expressed
LOC_Os04g36850OsAffx.26358.1.S1_at10/114+22024778..22027275expressed protein
LOC_Os04g36859Os.8619.1.S1_at7/114+22027808..22029970signal peptidase complex 25 kDa subunit, putative, expressed
LOC_Os04g36859Os.52782.1.S1_at1/114+22027808..22029970signal peptidase complex 25 kDa subunit, putative, expressed
LOC_Os04g36868NANA4+22030156..22030559expressed protein
LOC_Os04g36880NANA4+22038055..22038429expressed protein
LOC_Os04g36890Os.16231.1.S1_s_at11/114+22039220..22043505peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os04g36890Os.16231.1.S2_at11/114+22039220..22043505peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os04g36900Os.54731.1.S1_at10/114+22045539..22047542expressed protein
LOC_Os04g36900OsAffx.14173.1.S1_x_at8/114+22045539..22047542expressed protein
LOC_Os04g36910Os.19133.1.S1_at11/114+22048011..22053244expressed protein
LOC_Os04g37410OsAffx.14174.1.S1_at11/114+22065231..22066560hypothetical protein
LOC_Os04g37420OsAffx.26360.1.S1_at11/114+22068482..22068706hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16231.1.S1_s_at--33--6511Chr04:22040388..22040412 (25 bp)
GATATACAATCAGCGTAGAGGCAAA
LOC_Os04g36890
Os.16231.1.S1_s_at--37--9731Chr04:22041071..22041095 (25 bp)
TCAAGAGGATGACAAGCCTGCTGCT
LOC_Os04g36890
Os.16231.1.S1_s_at--1020--7391Chr04:22041142..22041166 (25 bp)
GTGATGATTCTAAACTGCAGCTTGT
LOC_Os04g36890
Os.16231.1.S1_s_at--754--1991Chr04:22041174..22041198 (25 bp)
ACTCCACCTGCTGAATCTTTGGAAA
LOC_Os04g36890
Os.16231.1.S1_s_at--964--852Chr04:22041211..22041235 (25 bp)
ATGGCTTTCCTGTATCATTTTCTGA
LOC_Os04g36890
Os.16231.1.S1_s_at--13--2351Chr04:22041316..22041340 (25 bp)
AAAGCAGTGCTGTTGGCGACCATCA
LOC_Os04g36890
Os.16231.1.S1_s_at--935--871Chr04:22041476..22041500 (25 bp)
AGGCCAAGGCCAAAAAGACTGCTGT
LOC_Os04g36890
Os.16231.1.S1_s_at--92--3291Chr04:22041522..22041546 (25 bp)
CAAACAGGAAGATTCTCCAGCTGAT
LOC_Os04g36890
Os.16231.1.S1_s_at--921--3811Chr04:22041536..22041560 (25 bp)
CTCCAGCTGATCTTGTTGATGCAAA
LOC_Os04g36890
Os.16231.1.S1_s_at--1033--2391Chr04:22041631..22041755 (25 bp)
AAACATATCCACACTGATGCTGAGG
LOC_Os04g36890
Os.16231.1.S1_s_at--1013--8171Chr04:22041754..22041778 (25 bp)
GGAAGACACTGCACAGGAGGCTAGC
LOC_Os04g36890
Target Sequence 
GATATACAATCAGCGTAGAGGCAAAAGTTCAGTTGTTATTGAGGAAATTCAAGAGGATGACAAGCCTGCTGCTGGTGGAG
CACAAAAGGGATCAAACAAGAANCAAACCAGCGAAAANTGGTGATGATTCTAAACTGCAGCTTGTTGTTAGNACTCCACC
TGCTGAATCTTTGGAAAGCGAAGATGAAGATGGCTTTCCTGTATCATTTTCTGAATCAAAGAAAAGAACTGATGGTAGTT
CTAAGAAAAAAGGCAACCTAAACAACAAGATGAGCACTGAAGATAGGAAAAGGAAAAGCAGTGCTGTTGGCGACCATCAT
GACCCTTCAGGGGAAGTAAAGGATGAAAATGATGGAGTGTCAAAGAAAAATAAAAAGGCCAAGGCCAAAAAGACTGCTGT
GGGCGGTGTGGAAAAGGAGATCAAACAGGAAGATTCTCCAGCTGATCTTGTTGATGCAAAACAAAAGAAAAACAAGAACA
AAAATACCTCAGAAGCAGAAGCTGGTGCTCATCAGAATACCGATAAGACAAAACATATCCACACTGATGCTGAGGAAGAC
ACTGCACAGGAGGCTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16231.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis