Browse Element(s) Details


OsAffx.26358.1.S1_at

Description tigr:9632.m03508
TID=OsAffx.26358.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3685010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36800Os.47381.1.S1_x_at11/114+21997834..220022683-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os04g36800Os.47381.2.S1_at10/114+21997834..220022683-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os04g36810Os.6415.1.S1_at11/114+22004648..22008142U6 snRNA-associated Sm-like protein LSm1, putative, expressed
LOC_Os04g36820NANA4+22011012..22011497hypothetical protein
LOC_Os04g36830OsAffx.26357.1.S1_at11/114+22017500..22019654expressed protein
LOC_Os04g36840OsAffx.4007.1.S1_at11/114+22020147..22023130pentatricopeptide, putative, expressed
LOC_Os04g36850OsAffx.26358.1.S1_at10/114+22024778..22027275expressed protein
LOC_Os04g36859Os.8619.1.S1_at7/114+22027808..22029970signal peptidase complex 25 kDa subunit, putative, expressed
LOC_Os04g36859Os.52782.1.S1_at1/114+22027808..22029970signal peptidase complex 25 kDa subunit, putative, expressed
LOC_Os04g36868NANA4+22030156..22030559expressed protein
LOC_Os04g36880NANA4+22038055..22038429expressed protein
LOC_Os04g36890Os.16231.1.S1_s_at11/114+22039220..22043505peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os04g36890Os.16231.1.S2_at11/114+22039220..22043505peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os04g36900Os.54731.1.S1_at10/114+22045539..22047542expressed protein
LOC_Os04g36900OsAffx.14173.1.S1_x_at8/114+22045539..22047542expressed protein
LOC_Os04g36910Os.19133.1.S1_at11/114+22048011..22053244expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26358.1.S1_at--538--2891Chr04:22025447..22025471 (25 bp)
AAGGTAGTTCTGAAGCCTCTGGACT
LOC_Os04g36850
OsAffx.26358.1.S1_at--1038--4671Chr04:22025508..22025532 (25 bp)
GCGGTGATATACAGCTTCTTTCCAA
LOC_Os04g36850
OsAffx.26358.1.S1_at--733--6831NONE
GTTTCTCAATCTACAGGTCGGCATT
NONE
OsAffx.26358.1.S1_at--482--7811Chr04:22026643..22026667 (25 bp)
GGTCGGCATTGGTCACAATTTCCAT
LOC_Os04g36850
OsAffx.26358.1.S1_at--1006--8191Chr04:22026684..22026708 (25 bp)
GGAAGTGGAAGCTCTCTACGTGTTT
LOC_Os04g36850
OsAffx.26358.1.S1_at--373--3331Chr04:22026747..22026771 (25 bp)
CACTCAGCATGTTCCCAGGGTTTGA
LOC_Os04g36850
OsAffx.26358.1.S1_at--402--1611Chr04:22026790..22026814 (25 bp)
AGCTGAATATGTGCTTCCTGAGATT
LOC_Os04g36850
OsAffx.26358.1.S1_at--241--8071Chr04:22026970..22026994 (25 bp)
GGAGAACCTGCCTTCAGTATGAACT
LOC_Os04g36850
OsAffx.26358.1.S1_at--488--2531Chr04:22026991..22027015 (25 bp)
AACTACGGGCGATTGCAAGCATCAA
LOC_Os04g36850
OsAffx.26358.1.S1_at--887--1091Chr04:22027047..22027071 (25 bp)
AGATCGGTATTGACCCCTTACAAGG
LOC_Os04g36850
OsAffx.26358.1.S1_at--463--2971Chr04:22027110..22027134 (25 bp)
AATGGAGTTCTTCTCACTTGAGTCA
LOC_Os04g36850
Target Sequence 
AAGGTAGTTCTGAAGCCTCTGGACTATGAACGGAAGTGGAAGTTCCACTACAAGCCCATCAGCGGTGATATACAGCTTCT
TTCCAAGAAGATACCAGTAACGAAGTTTCTCAATCTACAGGTCGGCATTGGTCACAATTTCCATCTCAATGCCACTGGAT
GGAAGTGGAAGCTCTCTACGTGTTTGGGGGGAGATGGTGTCTCTCAGATAAGAAACAAATCGACACTCAGCATGTTCCCA
GGGTTTGATTTGAGGGTCGGTTGGAGAGCTGAATATGTGCTTCCTGAGATTCATGGGGCTGTTGGAACAGGAGAACCTGC
CTTCAGTATGAACTACGGGCGATTGCAAGCATCAATAGATCGAGTTGAGGCTATCGTAACACAGTCAGATCGGTATTGAC
CCCTTACAAGGTATATACCAGGAGGGTGAAGATGATACATCTCAAATCCAATGGAGTTCTTCTCACTTGAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis